Ss1.1-Pig4-TMW8023D18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAGCTCTTCTACCACGGGGACGATGTCGTCAAAGAGGACCCTGAGCTGCAGGCCTGGT GTCGGGAGATCACTGAGGTGGGGCTGTGCCAGGCCCAGGACCGAGGTTTCCCTGTGTCCC TCCAGTCCCAGAACCAACTCTGCCATTTCCTTACCATGTGCGTCTTCACGTGCACCGCTC AGCACGGGGCCATCAACCAGGGCCAGCTGGACTGGTACGCCTGGGTCCCTAATGCCCCCT GCACGATGCGGATGCCCCCACCCACCACCAAGGAAGACGTGACAATGGCCACAGTGATGG GCTCGCTACCTGATGTCCGACAGGCCTGTCTTCAAATGGCCATCACATGGCATCTGGGTC GCCGCCAGCCAGACATGGTGCCTCTGGGGCATCACAAAGAAATGTATTTCTCAAGCCCCA AGGCCAAGGCTGTACTAAACCAATTCCAAAGAGATTTGGAAAACTTGGAAAAGGCTATTA CAGCCCGCAATGAGCAACTTAACCTGCCCTATGAATACCTGAGGCCCAGCCTCATAGAGA ACAGCGTTACCATCTGAGCTCGAAGGCACCTCCAGCAGGAAGATTGCAGATCAGCTCTGG GACCGACACTTGCACCTTGAGTTTCAAGGTTTCTTACAACTCTGCTGCTGCAGCTCCATT TCCTCCCCCAATGAAACACCCTATATCTGTATCCCACGAGCTCAGGAGGCAGGTGGCAAA GCTTTTCTGTAAAGGTCCTGATAATATTATAGGCTTTGCAGGCCACACAGTCAGTGTTGA AACCACTCAGCTCTCCTGTTGTAGCACAAAAGCAGCCACCGGCAAGATGTAAATGAATGT GACCCATGTTCCAATAAAACTTTATTTATGGACAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAGCTCTTCTACCACGGGGACGATGTCGTCAAAGAGGACCCTGAGCTGCAGGCCTGGT GTCGGGAGATCACTGAGGTGGGGCTGTGCCAGGCCCAGGACCGAGGTTTCCCTGTGTCCC TCCAGTCCCAGAACCAACTCTGCCATTTCCTTACCATGTGCGTCTTCACGTGCACCGCTC AGCACGGGGCCATCAACCAGGGCCAGCTGGACTGGTACGCCTGGGTCCCTAATGCCCCCT GCACGATGCGGATGCCCCCACCCACCACCAAGGAAGACGTGACAATGGCCACAGTGATGG GCTCGCTACCTGATGTCCGACAGGCCTGTCTTCAAATGGCCATCACATGGCATCTGGGTC GCCGCCAGCCAGACATGGTGCCTCTGGGGCATCACAAAGAAATGTATTTCTCAAGCCCCA AGGCCAAGGCTGTACTAAACCAATTCCAAAGAGATTTGGAAAACTTGGAAAAGGCTATTA CAGCCCGCAATGAGCAACTTAACCTGCCCTATGAATACCTGAGGCCCAGCCTCATAGAGA ACAGCGTTACCATCTGAGCTCGAAGGCACCTCCAGCAGGAAGATTGCAGATCAGCTCTGG GACCGACACTTGCACCTTGAGTTTCAAGGTTTCTTACAACTCTGCTGCTGCAGCTCCATT TCCTCCCCCAATGAAACACCCTATATCTGTATCCCACGAGCTCAGGAGGCAGGTGGCAAA GCTTTTCTGTAAAGGTCCTGATAATATTATAGGCTTTGCAGGCCACACAGTCAGTGTTGA AACCACTCAGCTCTCCTGTTGTAGCACAAAAGCAGCCACCGGCAAGATGTAAATGAATGT GACCCATGTTCCAATAAAACTTTATTTATGGACAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 377-495, - strand, RNAz p=0.849958 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 377-495, - strand, RNAz p=0.849958 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr19 (14651890-14651996) | |
| 1-107, gnl|canFam2|chr5 (35030846-35030997) | |
| 1-107, gnl|danRer3|chr7 (12524656-12524528) | |
| 1-107, gnl|dasNov1|scaffold_31900 (8548-8701) | |
| 1-107, gnl|echTel1|scaffold_214344 (964-809) | |
| 1-107, gnl|fr1|chrUn (118903220-118903095) | |
| 1-107, gnl|hg17|chr17 (6850497-6850640) | |
| 1-107, gnl|Hg17|chr17 (6850546-6850652) | |
| 1-107, gnl|loxAfr1|scaffold_159305 (4714-4862) | |
| 1-107, gnl|mm7|chr11 (70327591-70327447) | |
| 1-107, gnl|Mm7|chr11 (70327539-70327433) | |
| 1-107, gnl|monDom2|scaffold_66 (3945518-3945663) | |
| 1-107, gnl|oryCun1|scaffold_191368 (12166-12314) | |
| 1-107, gnl|panTro1|chr19_random (44907643-44907500) | |
| 1-107, gnl|rheMac2|chr16 (6719778-6719921) | |
| 1-107, gnl|rn3|chr10 (57097968-57097824) | |
| 1-107, gnl|tetNig1|chr18 (5948542-5948434) | |
| 377-626, gnl|bosTau2|chr19 (14654558-14654807) | |
| 377-626, gnl|canFam2|chr5 (35034013-35034197) | |
| 377-626, gnl|danRer3|chr7 (12520223-12520042) | |
| 377-626, gnl|dasNov1|scaffold_31900 (11070-11254) | |
| 377-626, gnl|echTel1|scaffold_247675 (1030-846) | |
| 377-626, gnl|fr1|chrUn (229083056-229083243) | |
| 377-626, gnl|hg17|chr17 (6854284-6854468) | |
| 377-626, gnl|Hg17|chr17 (6854286-6854535) | |
| 377-626, gnl|loxAfr1|scaffold_12425 (45370-45184) | |
| 377-626, gnl|mm7|chr11 (70324143-70323959) | |
| 377-626, gnl|Mm7|chr11 (70324139-70323895) | |
| 377-626, gnl|monDom2|scaffold_66 (3946826-3947010) | |
| 377-626, gnl|panTro1|chr19_random (44903840-44903656) | |
| 377-626, gnl|rheMac2|chr16 (6723179-6723363) | |
| 377-626, gnl|rn3|chr10 (57095209-57095025) | |
| 377-626, gnl|tetNig1|chr18 (5947677-5947493) | |
| 704-868, gnl|bosTau2|chr25 (11545508-11545677) | |
| 707-867, gnl|bosTau2|chr11 (10623558-10623722) | |
| 707-867, gnl|Mm7|chr6 (84267420-84267573) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr19 (14651890-14651996) | |
| 1-107, gnl|canFam2|chr5 (35030846-35030997) | |
| 1-107, gnl|danRer3|chr7 (12524656-12524528) | |
| 1-107, gnl|dasNov1|scaffold_31900 (8548-8701) | |
| 1-107, gnl|echTel1|scaffold_214344 (964-809) | |
| 1-107, gnl|fr1|chrUn (118903220-118903095) | |
| 1-107, gnl|hg17|chr17 (6850497-6850640) | |
| 1-107, gnl|Hg17|chr17 (6850546-6850652) | |
| 1-107, gnl|loxAfr1|scaffold_159305 (4714-4862) | |
| 1-107, gnl|mm7|chr11 (70327591-70327447) | |
| 1-107, gnl|Mm7|chr11 (70327539-70327433) | |
| 1-107, gnl|monDom2|scaffold_66 (3945518-3945663) | |
| 1-107, gnl|oryCun1|scaffold_191368 (12166-12314) | |
| 1-107, gnl|panTro1|chr19_random (44907643-44907500) | |
| 1-107, gnl|rheMac2|chr16 (6719778-6719921) | |
| 1-107, gnl|rn3|chr10 (57097968-57097824) | |
| 1-107, gnl|tetNig1|chr18 (5948542-5948434) | |
| 377-626, gnl|bosTau2|chr19 (14654558-14654807) | |
| 377-626, gnl|canFam2|chr5 (35034013-35034197) | |
| 377-626, gnl|danRer3|chr7 (12520223-12520042) | |
| 377-626, gnl|dasNov1|scaffold_31900 (11070-11254) | |
| 377-626, gnl|echTel1|scaffold_247675 (1030-846) | |
| 377-626, gnl|fr1|chrUn (229083056-229083243) | |
| 377-626, gnl|hg17|chr17 (6854284-6854468) | |
| 377-626, gnl|Hg17|chr17 (6854286-6854535) | |
| 377-626, gnl|loxAfr1|scaffold_12425 (45370-45184) | |
| 377-626, gnl|mm7|chr11 (70324143-70323959) | |
| 377-626, gnl|Mm7|chr11 (70324139-70323895) | |
| 377-626, gnl|monDom2|scaffold_66 (3946826-3947010) | |
| 377-626, gnl|panTro1|chr19_random (44903840-44903656) | |
| 377-626, gnl|rheMac2|chr16 (6723179-6723363) | |
| 377-626, gnl|rn3|chr10 (57095209-57095025) | |
| 377-626, gnl|tetNig1|chr18 (5947677-5947493) | |
| 704-868, gnl|bosTau2|chr25 (11545508-11545677) | |
| 707-867, gnl|bosTau2|chr11 (10623558-10623722) | |
| 707-867, gnl|Mm7|chr6 (84267420-84267573) |