Non-Coding RNA Search

Ss1.1-Pig4-TMW8023E15.5

Sequence:


               
               AAAACAGTTTTAAACCAGTTTCAAATATAAAAGTCTCCCAGAAATTATTTGCAATTAGAA
AACCTTTCCACAGTTTAAGACATTAGTTTCTTAGGTTTCGAACTGAGGAACTCTAAACAT
AGACTCAGGGTTTGAGAGAATGTTTTTCTTTTTAAATAGGTCTTCACATTAATCTAACTT
GAGAAACACTGCTTTACCCTCATCTGTCAGCATGTTTTAGGGCACCTAAGGCCTGGATGA
ATAAATCCCCATGTAAAAAATTATAAAATCTGGGGCATTCAGGCAAGTTATGTTTATCTT
TCTGAATGCAAGGTCCATTCTGGCAGAATAATTATTTAGATTTCTAAATTTGCTAGAACT
GACTTCATCGCTCTTCCGTTAAGGGGAGCCAGGAGACTGGATCGTATGGTCTTGTAGAGC
ACGGGCTGCAGATGAGTTGTCAGAGACCTAGTTGGTCTGGGCCTCTAAGGTCACTGGGGA
CCCACTGGAGATCCTGCTGGTACCTTGTGATTCCCAAGGCTTGCACGCCCCCTGCTGGAT
ATGGGCTGCATGGCTGCCTCAGGGCATGGGGAGAATTTTAACAGCTAGATTCCTCCTCTA
AAAACTACTACTACTACTACTACTACTACTCTTTAGATTATGCTTAAGGAAATCCCTAGT
TATGTTTCCATTGTTAACCGTTACTCATGTTAGAGCTTTTACTGAGACGAGACTTATTCT
CGATTTTCCATATGCCTTATGCTGAGTTTCTGCTCTAATAATCTGCCCTCACCATGGTAA
CCTCAAATACAGAGAAGTCGTGGTCATGTGGCATCCCACAGGCCTGAGTTACATTGCCAA
GGCCGTTAGCTCCTCGTTTTCTCTGTTCTCATTCACCGCTTTGTTGGTCTCTTGCACCCT
CCCCACCAGTTTGTGCCCTCAACTGACCACAGGCGAGTGGAAACTAGGCCTCATGCCTGA
GAAGGGTGTGCTCCCGATTGTGTTCCAAAGTGTGACAAAAAAATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACAGTTTTAAACCAGTTTCAAATATAAAAGTCTCCCAGAAATTATTTGCAATTAGAA
AACCTTTCCACAGTTTAAGACATTAGTTTCTTAGGTTTCGAACTGAGGAACTCTAAACAT
AGACTCAGGGTTTGAGAGAATGTTTTTCTTTTTAAATAGGTCTTCACATTAATCTAACTT
GAGAAACACTGCTTTACCCTCATCTGTCAGCATGTTTTAGGGCACCTAAGGCCTGGATGA
ATAAATCCCCATGTAAAAAATTATAAAATCTGGGGCATTCAGGCAAGTTATGTTTATCTT
TCTGAATGCAAGGTCCATTCTGGCAGAATAATTATTTAGATTTCTAAATTTGCTAGAACT
GACTTCATCGCTCTTCCGTTAAGGGGAGCCAGGAGACTGGATCGTATGGTCTTGTAGAGC
ACGGGCTGCAGATGAGTTGTCAGAGACCTAGTTGGTCTGGGCCTCTAAGGTCACTGGGGA
CCCACTGGAGATCCTGCTGGTACCTTGTGATTCCCAAGGCTTGCACGCCCCCTGCTGGAT
ATGGGCTGCATGGCTGCCTCAGGGCATGGGGAGAATTTTAACAGCTAGATTCCTCCTCTA
AAAACTACTACTACTACTACTACTACTACTCTTTAGATTATGCTTAAGGAAATCCCTAGT
TATGTTTCCATTGTTAACCGTTACTCATGTTAGAGCTTTTACTGAGACGAGACTTATTCT
CGATTTTCCATATGCCTTATGCTGAGTTTCTGCTCTAATAATCTGCCCTCACCATGGTAA
CCTCAAATACAGAGAAGTCGTGGTCATGTGGCATCCCACAGGCCTGAGTTACATTGCCAA
GGCCGTTAGCTCCTCGTTTTCTCTGTTCTCATTCACCGCTTTGTTGGTCTCTTGCACCCT
CCCCACCAGTTTGTGCCCTCAACTGACCACAGGCGAGTGGAAACTAGGCCTCATGCCTGA
GAAGGGTGTGCTCCCGATTGTGTTCCAAAGTGTGACAAAAAAATTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-466, - strand, RNAz p=0.999976

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-466, - strand, RNAz p=0.999976

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               323-377, + strand, RNAmicro p=0.953153

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               323-377, + strand, RNAmicro p=0.953153

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-466, gnl|bosTau2|chr7 (20580600-20580144)
               

               
               1-466, gnl|Hg17|chr5 (131322329-131321888)
               


               
               622-1001, gnl|bosTau2|chr7 (20579984-20579611)
               

               
               622-1001, gnl|Hg17|chr5 (131321731-131321349)
               

               
               622-1001, gnl|Mm7|chr11 (54311740-54312129)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-466, gnl|bosTau2|chr7 (20580600-20580144)
               

               
               1-466, gnl|Hg17|chr5 (131322329-131321888)
               


               
               622-1001, gnl|bosTau2|chr7 (20579984-20579611)
               

               
               622-1001, gnl|Hg17|chr5 (131321731-131321349)
               

               
               622-1001, gnl|Mm7|chr11 (54311740-54312129)

	1-466, gnl\|bosTau2\|chr7 (20580600-20580144)
	1-466, gnl\|Hg17\|chr5 (131322329-131321888)

	622-1001, gnl\|bosTau2\|chr7 (20579984-20579611)
	622-1001, gnl\|Hg17\|chr5 (131321731-131321349)
	622-1001, gnl\|Mm7\|chr11 (54311740-54312129)