Non-Coding RNA Search

Ss1.1-Pig4-TMW8023K01.3

Sequence:


               
               CCCCATGGAACCTGAGACATTCCCTGACAAATATTCCCTGCAGTTTGGCTTTGGGCCTTT
TGAGCTGCCTCCCCAGTGGCTCTCAGAGACCCGAAACAACAAGAAGAGGCTGCTTCCCCC
CTTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAGATGCCCAAGGTAGGCAGGGTGGA
GCGGAAGATGAGCAGGAACAATAAAGTGAGCATTTTCCCAAAGGTGGATTCCTAGCAAGG
CTTGTAAATCCCTGGAAGCCACAGGGCTTCCACATTCCTGCCCTCCTTCACTGGGCCCTG
AGATTGATTTGTAGGATCTCATTGCAACCCAGTATGGGTTGACTCTTCCTATATGAGCTG
AGTGCTTTTGAATGGGAAGGAAACCTATATAAAATCAAATGTCCTCTTTATTGAGGGCGT
ATATATATATATTTATTTCAGTGATCCACGTCCTTAGTAAAGTCTACATTCCTCTCTGGG
GAGACAAAAGCTGGGTAGTGGGAAACAGGTCTTGGGTGAGTACTCTGTGTGCATTTTCTG
GGGACATCCCAGTTCTAAGTAGAGAATACATGGAGAGAAAGAGAACAGGGGTATTCTAAG
GAAGCCCAAGATAATGATGGAGCTCTGTGGCTACAGAGAAAATCCTATTTTAAAATGACA
AATATTAAAAATGTTTTATAACGGTCTCTATCTTTAGGGAGGGTGAGGCCTTGGCATTTG
ACACCTTTTCTCTGAAAGTTCTGATCACGTGACTCATTTCGTCTGGATCTCCTGCACTGG
AATGTAAGTGAAGGATGTGTGACTGTTGCAGCTCCATTTGACAGATATGGCAACAGACAT
GCCTGGGGAGAAGGGAGATATTTTATCCTTGATTATCCTGACATTCTCCTGGCATCACTA
AATCTTCAGAAAGATTAGTTTGCAGTGTTGGTTGGAAAACACTGCAAGCTCTTTACATGT
TTTTTCCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCATGGAACCTGAGACATTCCCTGACAAATATTCCCTGCAGTTTGGCTTTGGGCCTTT
TGAGCTGCCTCCCCAGTGGCTCTCAGAGACCCGAAACAACAAGAAGAGGCTGCTTCCCCC
CTTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAGATGCCCAAGGTAGGCAGGGTGGA
GCGGAAGATGAGCAGGAACAATAAAGTGAGCATTTTCCCAAAGGTGGATTCCTAGCAAGG
CTTGTAAATCCCTGGAAGCCACAGGGCTTCCACATTCCTGCCCTCCTTCACTGGGCCCTG
AGATTGATTTGTAGGATCTCATTGCAACCCAGTATGGGTTGACTCTTCCTATATGAGCTG
AGTGCTTTTGAATGGGAAGGAAACCTATATAAAATCAAATGTCCTCTTTATTGAGGGCGT
ATATATATATATTTATTTCAGTGATCCACGTCCTTAGTAAAGTCTACATTCCTCTCTGGG
GAGACAAAAGCTGGGTAGTGGGAAACAGGTCTTGGGTGAGTACTCTGTGTGCATTTTCTG
GGGACATCCCAGTTCTAAGTAGAGAATACATGGAGAGAAAGAGAACAGGGGTATTCTAAG
GAAGCCCAAGATAATGATGGAGCTCTGTGGCTACAGAGAAAATCCTATTTTAAAATGACA
AATATTAAAAATGTTTTATAACGGTCTCTATCTTTAGGGAGGGTGAGGCCTTGGCATTTG
ACACCTTTTCTCTGAAAGTTCTGATCACGTGACTCATTTCGTCTGGATCTCCTGCACTGG
AATGTAAGTGAAGGATGTGTGACTGTTGCAGCTCCATTTGACAGATATGGCAACAGACAT
GCCTGGGGAGAAGGGAGATATTTTATCCTTGATTATCCTGACATTCTCCTGGCATCACTA
AATCTTCAGAAAGATTAGTTTGCAGTGTTGGTTGGAAAACACTGCAAGCTCTTTACATGT
TTTTTCCCCCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               45-282, - strand, RNAz p=0.880493
               

               
               321-422, + strand, RNAz p=0.987456

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-282, - strand, RNAz p=0.880493
               

               
               321-422, + strand, RNAz p=0.987456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-554, gnl|bosTau2|chr10 (23481860-23482416)
               

               
               6-554, gnl|Hg17|chr15 (37880854-37880305)
               

               
               6-554, gnl|Mm7|chr2 (118020306-118019825)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-554, gnl|bosTau2|chr10 (23481860-23482416)
               

               
               6-554, gnl|Hg17|chr15 (37880854-37880305)
               

               
               6-554, gnl|Mm7|chr2 (118020306-118019825)

	45-282, - strand, RNAz p=0.880493
	321-422, + strand, RNAz p=0.987456

	6-554, gnl\|bosTau2\|chr10 (23481860-23482416)
	6-554, gnl\|Hg17\|chr15 (37880854-37880305)
	6-554, gnl\|Mm7\|chr2 (118020306-118019825)