Non-Coding RNA Search

Ss1.1-Pig4-TMW8024C18.3

Sequence:


               
               CTTGTTGCTGGGTGGCTTGCTGGGTGGCTGTTTCCATCTGTGCAGAGCTGACAGTGGTTT
CCTTTGTTTGCAAGGATGAGTATAATGTTAATAAGGTCTGGAATGTAGGGAGTCAAGGCA
GATTTCTTTTGGAATCTCGTTTGGTCTTGGCTCCCCATAAGTGATAACACTAGTGCTTCT
CTGTTTCCAATAAGATGTTTACTGGGCCTTTCACACTTCATGAGTGGCTGATTTCTTCTT
TCACTTGCAACCTTTTATCTCATGGGTGCATACCTCCTAGGCATGCTTGGACAAGGTGTT
TTGGAAGAGATTTAGTTGGGGCCGGTGGCAGGGGTCTTCTTTTCTCCCAGAATGGATGAT
TTCCTTACTGCATTTGAAGATGTACAGTTTCTAGGCAAATTTTCATTATTGTTTCATCTC
TCAAGTCTTTGGTGATGATAAATCCTGTGTGTTTTCACCTGTCTGCAGCTGCATATGAAT
CCTGAGCATGGCAAAAATACCAAGAAAACATAAAAAAATATTTTAAAATGATCTCAAGTC
AGTGGAATTCACCCATTCTTCTGCCAAGTACAGTCTGGGAAGTGAAAATAGGCCTAACAA
ACCCAAATAACTTTTGTTTTTTTTAAAGGGACAGTATGGACCCTTGGATCAAAATGCAAG
ATACATTCACTTTGGCAGGAAACTGGGCGGTTAACACCCTTACTTCCATTTCAGACATAG
ACTGCCAGACCCATCCCCAAGTCTGGCAGGCTTCTGCGTGATGCTGGGAGAAGTCTGAGC
AGGCTTTCAGGCCTTGCAACAATTGTTGCTTGTGGGCTGGAAGGGATGCAGGCTTAGTGA
CAGAAGGCTCTAGAAGGGGGGTGCTGCTCACTGACCTGTGCTTCCTGACCTGGGTGCTGT
CCTCAGAGGGCCAATGATGAATAACTTTTTTTTTTTTTTAGCCCAGTGTGCTGATATTTT
TTTCCTTACAGAGGCATTGGCTTTACTGATGCAAAGGGTAAAATCTCAAAGAGGAAACTT
GTGGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTTGCTGGGTGGCTTGCTGGGTGGCTGTTTCCATCTGTGCAGAGCTGACAGTGGTTT
CCTTTGTTTGCAAGGATGAGTATAATGTTAATAAGGTCTGGAATGTAGGGAGTCAAGGCA
GATTTCTTTTGGAATCTCGTTTGGTCTTGGCTCCCCATAAGTGATAACACTAGTGCTTCT
CTGTTTCCAATAAGATGTTTACTGGGCCTTTCACACTTCATGAGTGGCTGATTTCTTCTT
TCACTTGCAACCTTTTATCTCATGGGTGCATACCTCCTAGGCATGCTTGGACAAGGTGTT
TTGGAAGAGATTTAGTTGGGGCCGGTGGCAGGGGTCTTCTTTTCTCCCAGAATGGATGAT
TTCCTTACTGCATTTGAAGATGTACAGTTTCTAGGCAAATTTTCATTATTGTTTCATCTC
TCAAGTCTTTGGTGATGATAAATCCTGTGTGTTTTCACCTGTCTGCAGCTGCATATGAAT
CCTGAGCATGGCAAAAATACCAAGAAAACATAAAAAAATATTTTAAAATGATCTCAAGTC
AGTGGAATTCACCCATTCTTCTGCCAAGTACAGTCTGGGAAGTGAAAATAGGCCTAACAA
ACCCAAATAACTTTTGTTTTTTTTAAAGGGACAGTATGGACCCTTGGATCAAAATGCAAG
ATACATTCACTTTGGCAGGAAACTGGGCGGTTAACACCCTTACTTCCATTTCAGACATAG
ACTGCCAGACCCATCCCCAAGTCTGGCAGGCTTCTGCGTGATGCTGGGAGAAGTCTGAGC
AGGCTTTCAGGCCTTGCAACAATTGTTGCTTGTGGGCTGGAAGGGATGCAGGCTTAGTGA
CAGAAGGCTCTAGAAGGGGGGTGCTGCTCACTGACCTGTGCTTCCTGACCTGGGTGCTGT
CCTCAGAGGGCCAATGATGAATAACTTTTTTTTTTTTTTAGCCCAGTGTGCTGATATTTT
TTTCCTTACAGAGGCATTGGCTTTACTGATGCAAAGGGTAAAATCTCAAAGAGGAAACTT
GTGGCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               62-212, + strand, RNAz p=0.99912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-212, + strand, RNAz p=0.99912

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               23-1006, gnl|bosTau2|chr1 (64233099-64232103)
               

               
               23-1006, gnl|Hg17|chr3 (173459150-173460147)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1006, gnl|bosTau2|chr1 (64233099-64232103)
               

               
               23-1006, gnl|Hg17|chr3 (173459150-173460147)

	23-1006, gnl\|bosTau2\|chr1 (64233099-64232103)
	23-1006, gnl\|Hg17\|chr3 (173459150-173460147)