Non-Coding RNA Search

Ss1.1-Pig4-TMW8024E14.3

Sequence:


               
               CTCCTTTCCCCCATTCCCTGTCTTCTCCATCTCATTGTCAACGATCCACTTTCCTCCCCA
AATATACCAGAGGCCAAGTGTGGGGCTGTCTCTGGAGCAGGGTGGGGGTGCGGTGGTGAG
AGGCCATCGGGGCCCGTATTGCCCTCTCCACCCACCCAAAGGCACAGAAGCGCCACCCCT
TTTGTTTAAACCAGATGCCATGGGCGGAATCTCTGAGCAGACGCCAGATACACTTCCTCC
CCTGATCGTTGCTCTGTGCACTCCTCAGGCCATAGATGATGAAGAAAGGAAGTTCCAATT
TGTGCGAATTCACAAGCCACCCCCACTGAACCCGCTGTACTTGGGCAGCCGCTACATTGT
GTCTGGTTCCGAGAATCTGGAAATTATTCCAGAGGAGCTGGAACTCTGCTATCGGAGTCC
CAGAGAACCCCAGCTATTCTCTGAATTCTACGTTGGTCATTGGAGGTCAGGGATCAAGCT
GCAAGTGACCAACAAGAAAGATGGGATTGTGGTATGGGAAGCCTTGGTGAAACCAGGTAA
AGTCAAGTCCAGGGAGCACGGGGGTGGGAGAAAGTTAACGTGTGTTTGTGTGTGCGCACA
TGTGCCCCTGTATGTGTGTGGCAGTTTGTATTATCACAACTTGCTTCTGAGAAAACATAG
ATCAGTGGACCCCATCCTGGACAAGCTGCATGGACAGGTACTGAGTGAGGAGCAGTATGA
GGGGGTGCGGGCTGAGGTCACCAAGCCAGACCAGATGCGGAAGCTGTTCGGCTTCAGCCG
GTCCTGGGACTGGGCCTGTAAGGACCGCCTCTATCAAGCCCTGAAGGAGACCCACCCTCA
CCTCATTGTGGAGCTCTGGGAGAGGTGGGGGTTGGAGAAGACCACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTTTCCCCCATTCCCTGTCTTCTCCATCTCATTGTCAACGATCCACTTTCCTCCCCA
AATATACCAGAGGCCAAGTGTGGGGCTGTCTCTGGAGCAGGGTGGGGGTGCGGTGGTGAG
AGGCCATCGGGGCCCGTATTGCCCTCTCCACCCACCCAAAGGCACAGAAGCGCCACCCCT
TTTGTTTAAACCAGATGCCATGGGCGGAATCTCTGAGCAGACGCCAGATACACTTCCTCC
CCTGATCGTTGCTCTGTGCACTCCTCAGGCCATAGATGATGAAGAAAGGAAGTTCCAATT
TGTGCGAATTCACAAGCCACCCCCACTGAACCCGCTGTACTTGGGCAGCCGCTACATTGT
GTCTGGTTCCGAGAATCTGGAAATTATTCCAGAGGAGCTGGAACTCTGCTATCGGAGTCC
CAGAGAACCCCAGCTATTCTCTGAATTCTACGTTGGTCATTGGAGGTCAGGGATCAAGCT
GCAAGTGACCAACAAGAAAGATGGGATTGTGGTATGGGAAGCCTTGGTGAAACCAGGTAA
AGTCAAGTCCAGGGAGCACGGGGGTGGGAGAAAGTTAACGTGTGTTTGTGTGTGCGCACA
TGTGCCCCTGTATGTGTGTGGCAGTTTGTATTATCACAACTTGCTTCTGAGAAAACATAG
ATCAGTGGACCCCATCCTGGACAAGCTGCATGGACAGGTACTGAGTGAGGAGCAGTATGA
GGGGGTGCGGGCTGAGGTCACCAAGCCAGACCAGATGCGGAAGCTGTTCGGCTTCAGCCG
GTCCTGGGACTGGGCCTGTAAGGACCGCCTCTATCAAGCCCTGAAGGAGACCCACCCTCA
CCTCATTGTGGAGCTCTGGGAGAGGTGGGGGTTGGAGAAGACCACTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61868504|ref|XP_604153.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868504|ref|XP_604153.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               393-512, + strand, RNAz p=0.588333
               

               
               677-770, + strand, RNAz p=0.534894
               

               
               753-870, + strand, RNAz p=0.91887

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-512, + strand, RNAz p=0.588333
               

               
               677-770, + strand, RNAz p=0.534894
               

               
               753-870, + strand, RNAz p=0.91887

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               393-669, gnl|bosTau2|chr19 (18602901-18602620)
               


               
               677-870, gnl|bosTau2|chr25 (23048445-23048252)
               

               
               677-870, gnl|canFam2|chr6 (20061913-20061538)
               

               
               677-870, gnl|dasNov1|scaffold_113876 (2155-2530)
               

               
               677-870, gnl|echTel1|scaffold_103526 (3483-3854)
               

               
               677-870, gnl|hg17|chr16 (31120310-31120681)
               

               
               677-870, gnl|Hg17|chr16 (31120598-31120405)
               

               
               677-870, gnl|mm7|chr7 (124089203-124089541)
               

               
               677-870, gnl|Mm7|chr7 (124089461-124089268)
               

               
               677-870, gnl|monDom2|scaffold_19 (7956676-7957082)
               

               
               677-870, gnl|oryCun1|scaffold_131209 (3956-4322)
               

               
               677-870, gnl|panTro1|chr18 (31916338-31916709)
               

               
               677-870, gnl|rheMac2|chr20 (29300393-29300765)
               

               
               677-870, gnl|rn3|chr1 (187425904-187426241)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-669, gnl|bosTau2|chr19 (18602901-18602620)
               


               
               677-870, gnl|bosTau2|chr25 (23048445-23048252)
               

               
               677-870, gnl|canFam2|chr6 (20061913-20061538)
               

               
               677-870, gnl|dasNov1|scaffold_113876 (2155-2530)
               

               
               677-870, gnl|echTel1|scaffold_103526 (3483-3854)
               

               
               677-870, gnl|hg17|chr16 (31120310-31120681)
               

               
               677-870, gnl|Hg17|chr16 (31120598-31120405)
               

               
               677-870, gnl|mm7|chr7 (124089203-124089541)
               

               
               677-870, gnl|Mm7|chr7 (124089461-124089268)
               

               
               677-870, gnl|monDom2|scaffold_19 (7956676-7957082)
               

               
               677-870, gnl|oryCun1|scaffold_131209 (3956-4322)
               

               
               677-870, gnl|panTro1|chr18 (31916338-31916709)
               

               
               677-870, gnl|rheMac2|chr20 (29300393-29300765)
               

               
               677-870, gnl|rn3|chr1 (187425904-187426241)

	393-512, + strand, RNAz p=0.588333
	677-770, + strand, RNAz p=0.534894
	753-870, + strand, RNAz p=0.91887

	393-669, gnl\|bosTau2\|chr19 (18602901-18602620)

	677-870, gnl\|bosTau2\|chr25 (23048445-23048252)
	677-870, gnl\|canFam2\|chr6 (20061913-20061538)
	677-870, gnl\|dasNov1\|scaffold_113876 (2155-2530)
	677-870, gnl\|echTel1\|scaffold_103526 (3483-3854)
	677-870, gnl\|hg17\|chr16 (31120310-31120681)
	677-870, gnl\|Hg17\|chr16 (31120598-31120405)
	677-870, gnl\|mm7\|chr7 (124089203-124089541)
	677-870, gnl\|Mm7\|chr7 (124089461-124089268)
	677-870, gnl\|monDom2\|scaffold_19 (7956676-7957082)
	677-870, gnl\|oryCun1\|scaffold_131209 (3956-4322)
	677-870, gnl\|panTro1\|chr18 (31916338-31916709)
	677-870, gnl\|rheMac2\|chr20 (29300393-29300765)
	677-870, gnl\|rn3\|chr1 (187425904-187426241)