Ss1.1-Pig4-TMW8024E21.3
|
GAATACCCAACCCTCCCCCAGCTGCACCAGGGGGTGCTCCCCTTACCGGATTTTGCCTCT
GGGGGGGAGAATGCAGCCTCAAGGGGTTGCCTTCGTGGCCCTGCCGCTCCTGGGACCCAC
CCTGGTCTGGCTGCTCACCCATCGGTGGAGGTCTGGTTGGTGTAACAACCTGAGGAAGCC
ACCCTGGTACCCATCCCACAGAGCCCTGCTGCTGGTGTGGACAGCTTTCTACTCTCTCAC
AGGCTATGCCTCCTACCTGGTGTGGAAGGAGCTGGGAGGGGGCCTTGGGTGGCCCCTGGC
CCTGCCCCTTGGCCTCTACTCTGTGCAGCTTGCCGTCAGCTGGACCGTCCTGATCCTCTT
TTTCGTGGCCCACAGCGCAGGTCTGGCCCTGCTGCACCTGCTGCTGCTCTTCGGACTGGT
GGTGAGCATGGCACTGATCTGGCACCCCATCAACAAGCTGGCTGCCCTGCTCCTGCTGCC
CTACCTGGCCTGGCTCACCGTGACCACTTCCATCACCTACCGCCTGTGGAGGGACAGCCT
TTGTCCAGGGCACCAGCCTCGGCTCATGGGGGAGAAGAACGACTGAGGCATTGGGGTCGG
GGGCGGGGGGTGGGGAGGCACCCAGGGGAGAGGAGGGAGGGCGAGGGCTTGATGAGTTCC
TGAAGGTGACGGCCCCCAGTGTGGCCACCGTCCAGGGTGCCCTGGTGCCACTTTCCATTA
GCATTCAGAGACCCTGGGAAGAGGGAGGAAACATTTTACCCAGAATGTAAATGAATAAAT
CCTATACCAATA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAATACCCAACCCTCCCCCAGCTGCACCAGGGGGTGCTCCCCTTACCGGATTTTGCCTCT
GGGGGGGAGAATGCAGCCTCAAGGGGTTGCCTTCGTGGCCCTGCCGCTCCTGGGACCCAC
CCTGGTCTGGCTGCTCACCCATCGGTGGAGGTCTGGTTGGTGTAACAACCTGAGGAAGCC
ACCCTGGTACCCATCCCACAGAGCCCTGCTGCTGGTGTGGACAGCTTTCTACTCTCTCAC
AGGCTATGCCTCCTACCTGGTGTGGAAGGAGCTGGGAGGGGGCCTTGGGTGGCCCCTGGC
CCTGCCCCTTGGCCTCTACTCTGTGCAGCTTGCCGTCAGCTGGACCGTCCTGATCCTCTT
TTTCGTGGCCCACAGCGCAGGTCTGGCCCTGCTGCACCTGCTGCTGCTCTTCGGACTGGT
GGTGAGCATGGCACTGATCTGGCACCCCATCAACAAGCTGGCTGCCCTGCTCCTGCTGCC
CTACCTGGCCTGGCTCACCGTGACCACTTCCATCACCTACCGCCTGTGGAGGGACAGCCT
TTGTCCAGGGCACCAGCCTCGGCTCATGGGGGAGAAGAACGACTGAGGCATTGGGGTCGG
GGGCGGGGGGTGGGGAGGCACCCAGGGGAGAGGAGGGAGGGCGAGGGCTTGATGAGTTCC
TGAAGGTGACGGCCCCCAGTGTGGCCACCGTCCAGGGTGCCCTGGTGCCACTTTCCATTA
GCATTCAGAGACCCTGGGAAGAGGGAGGAAACATTTTACCCAGAATGTAAATGAATAAAT
CCTATACCAATA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
509-617, - strand, RNAmicro p=0.958743 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
509-617, - strand, RNAmicro p=0.958743 |
|
66-278, gnl|bosTau2|chr23 (14364853-14364643) |
|
66-278, gnl|canFam2|chr12 (12802021-12802338) |
|
66-278, gnl|hg17|chr6 (41118538-41118842) |
|
66-278, gnl|Hg17|chr6 (41118698-41118924) |
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66-278, gnl|mm7|chr17 (46595653-46595369) |
|
66-278, gnl|Mm7|chr17 (46595508-46595305) |
|
66-278, gnl|monDom2|scaffold_42 (2521331-2521049) |
|
66-278, gnl|oryCun1|scaffold_148740 (322-7) |
|
66-278, gnl|panTro1|chr5 (41689904-41690208) |
|
66-278, gnl|rheMac2|chr4 (40865806-40866110) |
| |
|
385-792, gnl|bosTau2|chr23 (14364217-14363797) |
|
385-792, gnl|Hg17|chr6 (41119656-41120025) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
66-278, gnl|bosTau2|chr23 (14364853-14364643) |
|
66-278, gnl|canFam2|chr12 (12802021-12802338) |
|
66-278, gnl|hg17|chr6 (41118538-41118842) |
|
66-278, gnl|Hg17|chr6 (41118698-41118924) |
|
66-278, gnl|mm7|chr17 (46595653-46595369) |
|
66-278, gnl|Mm7|chr17 (46595508-46595305) |
|
66-278, gnl|monDom2|scaffold_42 (2521331-2521049) |
|
66-278, gnl|oryCun1|scaffold_148740 (322-7) |
|
66-278, gnl|panTro1|chr5 (41689904-41690208) |
|
66-278, gnl|rheMac2|chr4 (40865806-40866110) |
| |
|
385-792, gnl|bosTau2|chr23 (14364217-14363797) |
|
385-792, gnl|Hg17|chr6 (41119656-41120025) |
