Non-Coding RNA Search

Ss1.1-Pig4-TMW8024F20.3

Sequence:


               
               CGTCCCGGCCCAGACCGGTTCCAACCTGCTAGGGCCGGTCCCAACTGCCTCCAACTGCCA
CCAACCTTTGGTCGGGCTGTGGGGCGGGAAACCCAGTCCCGCCGCAAGTGGGGAAGGAGG
GAGCTCGCGGCGCAGAGTGCACACATCTCAGGCCTGGCCTTCGAGGCCTAACTGGTTCTC
AGGCCATAAAACCACAGTCCCAGGCACTCTCGGGGGGGATAAGAAGTCCAAGACGCGACC
AGGATGCGTTCCTAAGGGGCCAGCCCTAGAACGGCCTATGAATGACCACTAGCGTGAAGT
TCTGTTAGGCGACCTGTGTTCTGTGCACAGGAGGCCTTGTGCGTCCCTAAGGCCCAAGTG
TTGTCCACTTTGGCTGGAATTTACTTAAAAACATTTGACCCAGGCCAAGTCAGGGATCCC
GAAGGTGATGGGGTCCGAATATGTTCTCAGGCCCAACCCAGCTGTGGCCTCAGAGGGACC
CCCAAATGCTGACACTGCAAGAGTCCAGTAAGATGGAAAACCTCTTCCTGGGAATCTGCT
TGTGTCTAAATGTAGGTCCCTTTCGTCTTTTTATTTCCTTTCAGGGCACTTCAAGCAACT
CCCTAGTGCTAGGTACTTGATGAGAAAGAAAGGTGAAGAAGGCAGACCCTCCCTTTAAGC
AGAATGTTGGGTTTCCATTTTCCCTGATGCTCTTTGCCTCGCATCTCCTTGGGCTGCCAA
AATGTGTGCATGTTTGGAAGGATCCCCAAGTGTACCTCAATCTGGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCCCGGCCCAGACCGGTTCCAACCTGCTAGGGCCGGTCCCAACTGCCTCCAACTGCCA
CCAACCTTTGGTCGGGCTGTGGGGCGGGAAACCCAGTCCCGCCGCAAGTGGGGAAGGAGG
GAGCTCGCGGCGCAGAGTGCACACATCTCAGGCCTGGCCTTCGAGGCCTAACTGGTTCTC
AGGCCATAAAACCACAGTCCCAGGCACTCTCGGGGGGGATAAGAAGTCCAAGACGCGACC
AGGATGCGTTCCTAAGGGGCCAGCCCTAGAACGGCCTATGAATGACCACTAGCGTGAAGT
TCTGTTAGGCGACCTGTGTTCTGTGCACAGGAGGCCTTGTGCGTCCCTAAGGCCCAAGTG
TTGTCCACTTTGGCTGGAATTTACTTAAAAACATTTGACCCAGGCCAAGTCAGGGATCCC
GAAGGTGATGGGGTCCGAATATGTTCTCAGGCCCAACCCAGCTGTGGCCTCAGAGGGACC
CCCAAATGCTGACACTGCAAGAGTCCAGTAAGATGGAAAACCTCTTCCTGGGAATCTGCT
TGTGTCTAAATGTAGGTCCCTTTCGTCTTTTTATTTCCTTTCAGGGCACTTCAAGCAACT
CCCTAGTGCTAGGTACTTGATGAGAAAGAAAGGTGAAGAAGGCAGACCCTCCCTTTAAGC
AGAATGTTGGGTTTCCATTTTCCCTGATGCTCTTTGCCTCGCATCTCCTTGGGCTGCCAA
AATGTGTGCATGTTTGGAAGGATCCCCAAGTGTACCTCAATCTGGCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.7819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.7819

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               28-103, + strand, RNAmicro p=0.994713

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               28-103, + strand, RNAmicro p=0.994713

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-438, gnl|bosTau2|chr19 (49792619-49792169)
               

               
               1-438, gnl|Hg17|chr17 (71292775-71293320)
               

               
               1-438, gnl|Mm7|chr11 (116139639-116140113)
               


               
               457-766, gnl|bosTau2|chr19 (49792186-49791873)
               

               
               457-766, gnl|Hg17|chr17 (71293281-71293595)
               

               
               457-766, gnl|Mm7|chr11 (116140076-116140350)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-438, gnl|bosTau2|chr19 (49792619-49792169)
               

               
               1-438, gnl|Hg17|chr17 (71292775-71293320)
               

               
               1-438, gnl|Mm7|chr11 (116139639-116140113)
               


               
               457-766, gnl|bosTau2|chr19 (49792186-49791873)
               

               
               457-766, gnl|Hg17|chr17 (71293281-71293595)
               

               
               457-766, gnl|Mm7|chr11 (116140076-116140350)

	1-438, gnl\|bosTau2\|chr19 (49792619-49792169)
	1-438, gnl\|Hg17\|chr17 (71292775-71293320)
	1-438, gnl\|Mm7\|chr11 (116139639-116140113)

	457-766, gnl\|bosTau2\|chr19 (49792186-49791873)
	457-766, gnl\|Hg17\|chr17 (71293281-71293595)
	457-766, gnl\|Mm7\|chr11 (116140076-116140350)