Non-Coding RNA Search

Ss1.1-Pig4-TMW8024H21.3

Sequence:


               
               CCCCCCACAACTTCACTGCTTGCTCTGTGTCCTCTGTTGCAGTTCACAATGTGAAGCCCG
AGTGTCTGGATGCCTACAACAGCCTGACGTGAGCCCCCTCCTGTCCCAGACCCTGCTTGG
GTGGGGACCTCTATCCCAGCCCTGTTCTCTGTGCAGAAATCCAGGGGGTACAGGTTTCAG
AGCCACAGGTCCTAAGGATGCCTTGTGCAGCCTCTGCATCTTAGAGATGGGGAGACTGAG
GCCCAGCCCTGAGGGTCTGAGTTGGAAACTGGGGCGCTGGTGGCTGATGTGAGCCCTCCT
CCTGCTCTGTGCCTTCCCACAGGGAGGCCGTGCTGCCCAAGCTGCACCTGGATGAGGACT
ACCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACGGGGAGCAGGACCAGGCTGGTG
AGCTGCCCACCTCTTCAGTACCACTGCTGCCCAGCCCAGTGGCTGCCCTTCCCTCCATCT
GCACAGTGGTGCCCAGAGAGGTCTTTATAAATGCAGCCCTCATTGGCTCACTCCCTGCTC
AAATGCTGGGGCTGCCCCCTCTGCCCTTGGGGTGGCCTGTGAGGCTCTTGAGTCCTTCCC
TGTCCGGCTGCTGACCTCATCTCACCACGTCCTCTTGCTCGCCGTATGTCCCGCTCAGGC
TTCTTTCCATTCTTTATATGAACAGTTTTTTTCCCCTAGTTCCAGGCTGTTGTTCATGCT
GTTTCAACAGCCCGAAGCGCTCTTTCTCTCTTGCCTGTCTTATATGGCGTACTCCTCTAC
TCACCATTTACTTTGGTGTAGACATCACCTCCTCCTGGAAGCCTCCCCTGACTCAACCTG
GGTGGGGCACCTCTCTTGGCTCCTTAGCCCCAGAATGTGCCCCTTCACAGCCCTGACCGT
GTGCCCTGTTCTGTCTGTCTCCCCATGTTGGTAGGTGGGGCCCCTGCTTGTCTTTCTTCA
CCATTGAATCTCCAGTGTGCAGTTCATATTTGTGGAATAAATAGGGAGTCCTGTCTGAGC
TGGTTCCTTACAGCTTCTTGGGGCACCCCCAGGAAGCCCCATCTCACTCAAACATGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCACAACTTCACTGCTTGCTCTGTGTCCTCTGTTGCAGTTCACAATGTGAAGCCCG
AGTGTCTGGATGCCTACAACAGCCTGACGTGAGCCCCCTCCTGTCCCAGACCCTGCTTGG
GTGGGGACCTCTATCCCAGCCCTGTTCTCTGTGCAGAAATCCAGGGGGTACAGGTTTCAG
AGCCACAGGTCCTAAGGATGCCTTGTGCAGCCTCTGCATCTTAGAGATGGGGAGACTGAG
GCCCAGCCCTGAGGGTCTGAGTTGGAAACTGGGGCGCTGGTGGCTGATGTGAGCCCTCCT
CCTGCTCTGTGCCTTCCCACAGGGAGGCCGTGCTGCCCAAGCTGCACCTGGATGAGGACT
ACCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACGGGGAGCAGGACCAGGCTGGTG
AGCTGCCCACCTCTTCAGTACCACTGCTGCCCAGCCCAGTGGCTGCCCTTCCCTCCATCT
GCACAGTGGTGCCCAGAGAGGTCTTTATAAATGCAGCCCTCATTGGCTCACTCCCTGCTC
AAATGCTGGGGCTGCCCCCTCTGCCCTTGGGGTGGCCTGTGAGGCTCTTGAGTCCTTCCC
TGTCCGGCTGCTGACCTCATCTCACCACGTCCTCTTGCTCGCCGTATGTCCCGCTCAGGC
TTCTTTCCATTCTTTATATGAACAGTTTTTTTCCCCTAGTTCCAGGCTGTTGTTCATGCT
GTTTCAACAGCCCGAAGCGCTCTTTCTCTCTTGCCTGTCTTATATGGCGTACTCCTCTAC
TCACCATTTACTTTGGTGTAGACATCACCTCCTCCTGGAAGCCTCCCCTGACTCAACCTG
GGTGGGGCACCTCTCTTGGCTCCTTAGCCCCAGAATGTGCCCCTTCACAGCCCTGACCGT
GTGCCCTGTTCTGTCTGTCTCCCCATGTTGGTAGGTGGGGCCCCTGCTTGTCTTTCTTCA
CCATTGAATCTCCAGTGTGCAGTTCATATTTGTGGAATAAATAGGGAGTCCTGTCTGAGC
TGGTTCCTTACAGCTTCTTGGGGCACCCCCAGGAAGCCCCATCTCACTCAAACATGCCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               434-529, - strand, RNAz p=0.798714
               

               
               723-871, - strand, RNAz p=0.996326

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-529, - strand, RNAz p=0.798714
               

               
               723-871, - strand, RNAz p=0.996326

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               3-1066, gnl|bosTau2|chr17 (39497379-39496344)
               

               
               3-1066, gnl|Hg17|chr22 (28290783-28287832)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1066, gnl|bosTau2|chr17 (39497379-39496344)
               

               
               3-1066, gnl|Hg17|chr22 (28290783-28287832)

	434-529, - strand, RNAz p=0.798714
	723-871, - strand, RNAz p=0.996326

	3-1066, gnl\|bosTau2\|chr17 (39497379-39496344)
	3-1066, gnl\|Hg17\|chr22 (28290783-28287832)