Non-Coding RNA Search

Ss1.1-Pig4-TMW8024I07.3

Sequence:


               
               TCCCTGCCTCACCCGCCATGATCCTCCCTCTGCCCTGGCTCTCCCGATGTTGCTGCCGTG
GTCTCCTGCCATTCTGGCCCCCGGTACTCCAGGGTACCTGGAGGTGCTGCTCCCAGGGTT
CCAAGGCAAACAGAGAAGACGCTAGCTCCGACGGCCTTGGGAAGATGTCCCCCTCCAGGG
AGCCCGAGCCCCGCCCCACAGCTGAGCTGACCCAAGCTGAGGAGTTGCTGGAGCAGCAGC
TGGAGCTGTACCAGGCCCTGCTGGATGGGCAAGAGGGGGCCTGGGAAGCACAGGCCCTGG
TGCTCAAGATCCAGAAGCTGAAGGAACAGATGAGAAGACACAGAGAGAGCCTGGGAGAAG
ATGCCCAAGCCTCCCACTAGTTCCAACTTCAACGCTCTCCAACTGGAAACACTGTGCCCA
CCCCCTCCAGCCCTTCAATCAAACATCCCAGCCTCTCCTAAGCCACTAAGAAAACCAAAT
AAACCACTACAAAGGGCCAGAAGTTGGAAGATAGGGAGGAAGAACCGTGGTACAGCCTTT
TAATCACACCCCCCCATGTGCCCCCTCCCACTGACCTTGGCCCAAAAGCAGGGTATACTG
TCCCTGCAGGAATTTACTTTGGATTGTGCCCTAAAACAATCTCACCCCAAATCCAATAAA
GGGACGGAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGCCTCACCCGCCATGATCCTCCCTCTGCCCTGGCTCTCCCGATGTTGCTGCCGTG
GTCTCCTGCCATTCTGGCCCCCGGTACTCCAGGGTACCTGGAGGTGCTGCTCCCAGGGTT
CCAAGGCAAACAGAGAAGACGCTAGCTCCGACGGCCTTGGGAAGATGTCCCCCTCCAGGG
AGCCCGAGCCCCGCCCCACAGCTGAGCTGACCCAAGCTGAGGAGTTGCTGGAGCAGCAGC
TGGAGCTGTACCAGGCCCTGCTGGATGGGCAAGAGGGGGCCTGGGAAGCACAGGCCCTGG
TGCTCAAGATCCAGAAGCTGAAGGAACAGATGAGAAGACACAGAGAGAGCCTGGGAGAAG
ATGCCCAAGCCTCCCACTAGTTCCAACTTCAACGCTCTCCAACTGGAAACACTGTGCCCA
CCCCCTCCAGCCCTTCAATCAAACATCCCAGCCTCTCCTAAGCCACTAAGAAAACCAAAT
AAACCACTACAAAGGGCCAGAAGTTGGAAGATAGGGAGGAAGAACCGTGGTACAGCCTTT
TAATCACACCCCCCCATGTGCCCCCTCCCACTGACCTTGGCCCAAAAGCAGGGTATACTG
TCCCTGCAGGAATTTACTTTGGATTGTGCCCTAAAACAATCTCACCCCAAATCCAATAAA
GGGACGGAGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MCCD1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MCCD1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               173-371, - strand, RNAz p=0.998364
               

               
               412-524, - strand, RNAz p=0.724099
               

               
               549-668, + strand, RNAz p=0.552731

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-371, - strand, RNAz p=0.998364
               

               
               412-524, - strand, RNAz p=0.724099
               

               
               549-668, + strand, RNAz p=0.552731

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001011700, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001011700, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               173-668, gnl|bosTau2|chr23 (23201092-23201575)
               

               
               173-668, gnl|Hg17|chr6 (31605499-31605970)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-668, gnl|bosTau2|chr23 (23201092-23201575)
               

               
               173-668, gnl|Hg17|chr6 (31605499-31605970)

	173-371, - strand, RNAz p=0.998364
	412-524, - strand, RNAz p=0.724099
	549-668, + strand, RNAz p=0.552731

	173-668, gnl\|bosTau2\|chr23 (23201092-23201575)
	173-668, gnl\|Hg17\|chr6 (31605499-31605970)