Ss1.1-Pig4-TMW8024K17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAAGCACTATCCTTTCCAGCGTCTGGATGGTTCCATCAAGGGAGAAATCCGAAAACAGG CATTGGACCACTTCAATGCAGATGGGTCTGAGGACTTCTGTTTCCTGCTCTCGACAAGGG CTGGTGGCCTGGGAATCAATTTGGCTTCAGCGGACACAGTCGTCATCTTTGACTCTGACT GGAACCCCCAGAACGACTTGCAGGCACAAGCCCGAGCCCATAGAATTGGTCAGAAGAAGC AGGTAAATATTTACCGCCTCGTTACAAAGGGGACTGTGGAAGAAGAGATCATAGAACGGG CCAAAAAGAAGATGGTATTGGACCATCTGGTGATTCAGCGCATGGATACCACTGGGCGGA CAGTTCTGGAAAACAACTCAGGAAGGTCCAATTCAAATCCTTTTAATAAAGAAGAGCTGA CAGCTATTTTGAAATTTGGAGCAGAAGATCTCTTCAAAGAACTTGAAGGGGAGGAATCAG AGCCTCAGGAAATGGATATAGACGAAATTTTGCGCTTGGCTGAAACCAGAGAGAATGAAG TCTCAACAAGTGCAACAGATGAGCTTCTGTCACAATTTAAGGTTGCCAACTTTGCCACGA TGGAGGACGAGGAGGAGCTAGAAGAGCGTCCTCACAAGGACTGGGATGAGATCATTCCAG AGGAGCAAAGGAAAAAAGTAGAGGAGGAAGAGCGGCAGAAGGAGCTGGAGGAAATTTATA TGTTGCCTCGAATTCGGAGTTCCACTAAAAAGGCTCAGACAAATGACAGTGATTCTGATA CTGAGTCTAAGAGGCAGGCCCAGAGATCCTCTGCCTCTGAGAGTGAGACGGATGAGTCTG ATGATGACAAGAAGCCCAAGCGCAGAGGGCGCCCCCGAAGTGTGCGGAAGGACCTCGTGG AGGGATTCACAGACGCTGAGATCCGGAGGTTCATCAAGGCATATAAGAAGTTTGGTCTCC CTCTTGAACGGCTGGAGTGCATAGCACGTGACGCTGAGCTGGTAGATAAGTCTGTGGCAG ATCTGAAGCGCCTGGGGGAGTTGATTCACAACAGCTGTGTGTCAGCAATGCAGGAATATG AAGAGCAGCTGAAAGAAAATGCCAGCGAGGGGAAAGGACCAGGGAAAAAGAGAGGCCCAA CAATCAAGATATCTGGGGTTCAGGTTAATGTGAAATCTATTATCCAGCATGAAGAGGAGT TTGAGATGCTGCATAAATCTATCCCTGTAGACCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAAGCACTATCCTTTCCAGCGTCTGGATGGTTCCATCAAGGGAGAAATCCGAAAACAGG CATTGGACCACTTCAATGCAGATGGGTCTGAGGACTTCTGTTTCCTGCTCTCGACAAGGG CTGGTGGCCTGGGAATCAATTTGGCTTCAGCGGACACAGTCGTCATCTTTGACTCTGACT GGAACCCCCAGAACGACTTGCAGGCACAAGCCCGAGCCCATAGAATTGGTCAGAAGAAGC AGGTAAATATTTACCGCCTCGTTACAAAGGGGACTGTGGAAGAAGAGATCATAGAACGGG CCAAAAAGAAGATGGTATTGGACCATCTGGTGATTCAGCGCATGGATACCACTGGGCGGA CAGTTCTGGAAAACAACTCAGGAAGGTCCAATTCAAATCCTTTTAATAAAGAAGAGCTGA CAGCTATTTTGAAATTTGGAGCAGAAGATCTCTTCAAAGAACTTGAAGGGGAGGAATCAG AGCCTCAGGAAATGGATATAGACGAAATTTTGCGCTTGGCTGAAACCAGAGAGAATGAAG TCTCAACAAGTGCAACAGATGAGCTTCTGTCACAATTTAAGGTTGCCAACTTTGCCACGA TGGAGGACGAGGAGGAGCTAGAAGAGCGTCCTCACAAGGACTGGGATGAGATCATTCCAG AGGAGCAAAGGAAAAAAGTAGAGGAGGAAGAGCGGCAGAAGGAGCTGGAGGAAATTTATA TGTTGCCTCGAATTCGGAGTTCCACTAAAAAGGCTCAGACAAATGACAGTGATTCTGATA CTGAGTCTAAGAGGCAGGCCCAGAGATCCTCTGCCTCTGAGAGTGAGACGGATGAGTCTG ATGATGACAAGAAGCCCAAGCGCAGAGGGCGCCCCCGAAGTGTGCGGAAGGACCTCGTGG AGGGATTCACAGACGCTGAGATCCGGAGGTTCATCAAGGCATATAAGAAGTTTGGTCTCC CTCTTGAACGGCTGGAGTGCATAGCACGTGACGCTGAGCTGGTAGATAAGTCTGTGGCAG ATCTGAAGCGCCTGGGGGAGTTGATTCACAACAGCTGTGTGTCAGCAATGCAGGAATATG AAGAGCAGCTGAAAGAAAATGCCAGCGAGGGGAAAGGACCAGGGAAAAAGAGAGGCCCAA CAATCAAGATATCTGGGGTTCAGGTTAATGTGAAATCTATTATCCAGCATGAAGAGGAGT TTGAGATGCTGCATAAATCTATCCCTGTAGACCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 274-391, + strand, RNAz p=0.802999 | |
| 997-1114, + strand, RNAz p=0.98021 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 274-391, + strand, RNAz p=0.802999 | |
| 997-1114, + strand, RNAz p=0.98021 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 83-204, gnl|bosTau2|chr16 (35007550-35007671) | |
| 83-204, gnl|canFam2|chr5 (63044295-63044454) | |
| 83-204, gnl|danRer3|chr11 (14548197-14548059) | |
| 83-204, gnl|dasNov1|scaffold_81545 (1014-1172) | |
| 83-204, gnl|echTel1|scaffold_227484 (6951-6804) | |
| 83-204, gnl|fr1|chrUn (283175337-283175497) | |
| 83-204, gnl|galGal2|chr21 (570542-570400) | |
| 83-204, gnl|hg17|chr1 (6124507-6124667) | |
| 83-204, gnl|Hg17|chr1 (6124650-6124529) | |
| 83-204, gnl|loxAfr1|scaffold_1872 (22011-22164) | |
| 83-204, gnl|mm7|chr4 (151364756-151364610) | |
| 83-204, gnl|Mm7|chr4 (151364623-151364744) | |
| 83-204, gnl|monDom2|scaffold_78 (2418309-2418156) | |
| 83-204, gnl|oryCun1|scaffold_209667 (45758-45620) | |
| 83-204, gnl|panTro1|chr1 (6051883-6052039) | |
| 83-204, gnl|rheMac2|chr1 (9130431-9130591) | |
| 83-204, gnl|rn3|chr5 (169616344-169616198) | |
| 83-204, gnl|tetNig1|chr20 (671020-671153) | |
| 83-204, gnl|xenTro1|scaffold_46 (525439-525578) | |
| 240-391, gnl|bosTau2|chr21 (8088243-8088394) | |
| 240-391, gnl|Hg17|chr15 (91323366-91323517) | |
| 240-391, gnl|Mm7|chr7 (69327412-69327261) | |
| 751-940, gnl|bosTau2|chr21 (8094669-8094858) | |
| 751-940, gnl|Hg17|chr15 (91329730-91329919) | |
| 751-940, gnl|Mm7|chr7 (69321388-69321199) | |
| 970-1114, gnl|bosTau2|chr21 (8100272-8100416) | |
| 970-1114, gnl|Hg17|chr15 (91337092-91337236) | |
| 970-1114, gnl|Mm7|chr7 (69316531-69316387) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-204, gnl|bosTau2|chr16 (35007550-35007671) | |
| 83-204, gnl|canFam2|chr5 (63044295-63044454) | |
| 83-204, gnl|danRer3|chr11 (14548197-14548059) | |
| 83-204, gnl|dasNov1|scaffold_81545 (1014-1172) | |
| 83-204, gnl|echTel1|scaffold_227484 (6951-6804) | |
| 83-204, gnl|fr1|chrUn (283175337-283175497) | |
| 83-204, gnl|galGal2|chr21 (570542-570400) | |
| 83-204, gnl|hg17|chr1 (6124507-6124667) | |
| 83-204, gnl|Hg17|chr1 (6124650-6124529) | |
| 83-204, gnl|loxAfr1|scaffold_1872 (22011-22164) | |
| 83-204, gnl|mm7|chr4 (151364756-151364610) | |
| 83-204, gnl|Mm7|chr4 (151364623-151364744) | |
| 83-204, gnl|monDom2|scaffold_78 (2418309-2418156) | |
| 83-204, gnl|oryCun1|scaffold_209667 (45758-45620) | |
| 83-204, gnl|panTro1|chr1 (6051883-6052039) | |
| 83-204, gnl|rheMac2|chr1 (9130431-9130591) | |
| 83-204, gnl|rn3|chr5 (169616344-169616198) | |
| 83-204, gnl|tetNig1|chr20 (671020-671153) | |
| 83-204, gnl|xenTro1|scaffold_46 (525439-525578) | |
| 240-391, gnl|bosTau2|chr21 (8088243-8088394) | |
| 240-391, gnl|Hg17|chr15 (91323366-91323517) | |
| 240-391, gnl|Mm7|chr7 (69327412-69327261) | |
| 751-940, gnl|bosTau2|chr21 (8094669-8094858) | |
| 751-940, gnl|Hg17|chr15 (91329730-91329919) | |
| 751-940, gnl|Mm7|chr7 (69321388-69321199) | |
| 970-1114, gnl|bosTau2|chr21 (8100272-8100416) | |
| 970-1114, gnl|Hg17|chr15 (91337092-91337236) | |
| 970-1114, gnl|Mm7|chr7 (69316531-69316387) |