Non-Coding RNA Search

Ss1.1-Pig4-TMW8024O09.3

Sequence:


               
               CTTTGAACAGCACTTCTGGATCTTTTGAGTAAAAGGCCCTTTTGAAAATCTGATTAAACC
TGTGACTCGTAATTCTGTGCACACATACAGTCCTTTGTGGGTTTAAAATCCATTCTTGGA
CCTGCTAGGAAATCCTGGGCTTTGAGCCTCAAAGAATGGGAAGGGAAAACTGGGTGAGAA
GCCACTGAAGGAGCTCCTTGATACAAACAGTACTCAGTATTTTTGTTAGGGGAAGGGAGC
CCGATTATCAGTTCAGATAAAATGATGCCTCCATTGGTGGTTCCAAAAAGAGAGCTTGTT
GAAACTTGGTTGACTCCCCTTCAAAGGGAGATATTCTGGCCCCTGGACATCTTAATTTAA
CTTTGAGGATACTTTGTGGTGGGGTCTGCCCCTTTGAGCCAGACCCTCAACCTCCAGGAA
CATCCAGGTAGGGATGACAGGACGTATTTAACAAGCTGGGGGAACCAGTGGCATTCTTGC
AGTGAGGCCCAAAGGTTTGGTCATATCCTGTGTTTGGAGGTACTACCTGCCCAAAGTCGC
AACTCTCTTCCACAGGCCTAAGGTCTCTTGGAAAATCCAGGCAGTCGTAGCTTCCCAGGG
TGTGCCTAAGAGGAATTTTGAACAGCAGTCTCTGGTAGTTAATTTAATTCTATGCTTAAA
TCCTTTTGCTTTCTGCCCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGAACAGCACTTCTGGATCTTTTGAGTAAAAGGCCCTTTTGAAAATCTGATTAAACC
TGTGACTCGTAATTCTGTGCACACATACAGTCCTTTGTGGGTTTAAAATCCATTCTTGGA
CCTGCTAGGAAATCCTGGGCTTTGAGCCTCAAAGAATGGGAAGGGAAAACTGGGTGAGAA
GCCACTGAAGGAGCTCCTTGATACAAACAGTACTCAGTATTTTTGTTAGGGGAAGGGAGC
CCGATTATCAGTTCAGATAAAATGATGCCTCCATTGGTGGTTCCAAAAAGAGAGCTTGTT
GAAACTTGGTTGACTCCCCTTCAAAGGGAGATATTCTGGCCCCTGGACATCTTAATTTAA
CTTTGAGGATACTTTGTGGTGGGGTCTGCCCCTTTGAGCCAGACCCTCAACCTCCAGGAA
CATCCAGGTAGGGATGACAGGACGTATTTAACAAGCTGGGGGAACCAGTGGCATTCTTGC
AGTGAGGCCCAAAGGTTTGGTCATATCCTGTGTTTGGAGGTACTACCTGCCCAAAGTCGC
AACTCTCTTCCACAGGCCTAAGGTCTCTTGGAAAATCCAGGCAGTCGTAGCTTCCCAGGG
TGTGCCTAAGAGGAATTTTGAACAGCAGTCTCTGGTAGTTAATTTAATTCTATGCTTAAA
TCCTTTTGCTTTCTGCCCTAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               98-211, - strand, RNAz p=0.596296
               

               
               331-442, - strand, RNAz p=0.571037

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-211, - strand, RNAz p=0.596296
               

               
               331-442, - strand, RNAz p=0.571037

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-677, gnl|bosTau2|chr5 (21677368-21678034)
               

               
               1-677, gnl|Hg17|chr12 (48377164-48375885)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-677, gnl|bosTau2|chr5 (21677368-21678034)
               

               
               1-677, gnl|Hg17|chr12 (48377164-48375885)

	98-211, - strand, RNAz p=0.596296
	331-442, - strand, RNAz p=0.571037

	1-677, gnl\|bosTau2\|chr5 (21677368-21678034)
	1-677, gnl\|Hg17\|chr12 (48377164-48375885)