Non-Coding RNA Search

Ss1.1-Pig4-TMW8024O10.3

Sequence:


               
               CGGGAGTCGCGGCTATGGAAGCGCTGGAGGAGAAAGAGGCGCAGGTGATGGGGTGCGAGC
GGGGCTTGGCGGTCTCCGGGAAACCGCGTCTTTGACCCACCAGCTTCGCCGGCGGCTCTC
CTGGGCTCGCCACTTTTACTTTCTTCCTCTGCCTGCTCTGCTGGTCCATCTTTAAGTCCC
GCCTTCACGATCTGTGAGCCCCTTCTCTGCTTAAAACTCCTCACTTCCACCTTCCTTCTC
CGGCCTTTCGCGCTGGGACTCGCGCTTGAAAAGGGATTGAGGGGCCTTCTGAACCCGAAC
TCACCTTCCAACCAAGCCTCGCTGTTCCCAGCTGCTTCCTCCTAAATTCTCACACCTGAC
CTGCTTGCGCGTCTCGCATCCCAACTCTAGGAGTTGGCACCGCGGAGCTTGTGGTGTGTT
GGAGACCACTCTTCTTTTCCGACTTTTCAGCTGTAATAATGCTTTAGTACCTGCATATTG
ATCTTAGAAGTTATTCGAATGATGCAGAATATTAGCCCATACTACGTAGCTTTGGAAAAG
GATGTATTGTTTTCTAGTAATTTTGTTCATTTTGCTTGCTCACTTTTTATTTCCTGACAT
CTGGTATCTCTCTGCCTAGAGACAAGTTAGGATGTGAAGCACTCAATATTCAATGCTAGA
ATATTGATAGAAAACGTTTACTTTGCTACTAATTACTTGTTGGTCATATTTGCTTTGAGC
CATTGTGATAAACAAGGCTTATAAGATTTTTCGCCACCCCTCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAGTCGCGGCTATGGAAGCGCTGGAGGAGAAAGAGGCGCAGGTGATGGGGTGCGAGC
GGGGCTTGGCGGTCTCCGGGAAACCGCGTCTTTGACCCACCAGCTTCGCCGGCGGCTCTC
CTGGGCTCGCCACTTTTACTTTCTTCCTCTGCCTGCTCTGCTGGTCCATCTTTAAGTCCC
GCCTTCACGATCTGTGAGCCCCTTCTCTGCTTAAAACTCCTCACTTCCACCTTCCTTCTC
CGGCCTTTCGCGCTGGGACTCGCGCTTGAAAAGGGATTGAGGGGCCTTCTGAACCCGAAC
TCACCTTCCAACCAAGCCTCGCTGTTCCCAGCTGCTTCCTCCTAAATTCTCACACCTGAC
CTGCTTGCGCGTCTCGCATCCCAACTCTAGGAGTTGGCACCGCGGAGCTTGTGGTGTGTT
GGAGACCACTCTTCTTTTCCGACTTTTCAGCTGTAATAATGCTTTAGTACCTGCATATTG
ATCTTAGAAGTTATTCGAATGATGCAGAATATTAGCCCATACTACGTAGCTTTGGAAAAG
GATGTATTGTTTTCTAGTAATTTTGTTCATTTTGCTTGCTCACTTTTTATTTCCTGACAT
CTGGTATCTCTCTGCCTAGAGACAAGTTAGGATGTGAAGCACTCAATATTCAATGCTAGA
ATATTGATAGAAAACGTTTACTTTGCTACTAATTACTTGTTGGTCATATTTGCTTTGAGC
CATTGTGATAAACAAGGCTTATAAGATTTTTCGCCACCCCTCCCCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               574-678, - strand, RNAz p=0.838533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-678, - strand, RNAz p=0.838533

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-199, gnl|bosTau2|chr24 (33171965-33172152)
               

               
               1-199, gnl|Hg17|chr18 (41938362-41938558)
               

               
               1-199, gnl|Mm7|chr18 (78049419-78049264)
               


               
               351-748, gnl|bosTau2|chr24 (33172570-33172963)
               

               
               351-748, gnl|Hg17|chr18 (41938739-41939136)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr24 (33171965-33172152)
               

               
               1-199, gnl|Hg17|chr18 (41938362-41938558)
               

               
               1-199, gnl|Mm7|chr18 (78049419-78049264)
               


               
               351-748, gnl|bosTau2|chr24 (33172570-33172963)
               

               
               351-748, gnl|Hg17|chr18 (41938739-41939136)

	1-199, gnl\|bosTau2\|chr24 (33171965-33172152)
	1-199, gnl\|Hg17\|chr18 (41938362-41938558)
	1-199, gnl\|Mm7\|chr18 (78049419-78049264)

	351-748, gnl\|bosTau2\|chr24 (33172570-33172963)
	351-748, gnl\|Hg17\|chr18 (41938739-41939136)