Ss1.1-Pig4-TMW8025C13.3
|
GCGGCTCGAGTGAGAATTGATGTTTATAAACAGGTTAAGACCAAATTGTTGAAGGAAACA
GTTTCCATGTTGGGTATTGTTTTTGGTTGTTGTTGGTTTGGGTAGAAAGCTATAGAAGAT
GTTTTTGCTCTTGTTTTGGGTTTAGCTTGGTTGGTTGGTTTTTGGTTTTGTTGGCCGTAC
CCGAGGCATGTGGAATCAAATCCATGCCACAGCTTTGACACCCGGGATCCTTAACCCATT
GTGCCACCAGGGAACTCTTGGTTTGTTTGTTTTTAAAAAGTTAGCGCATTTAGATGGTAC
AAAATTCAAAAGGGTGCACACAGTGAATTCTCCCTCTCATCCTTGTCTCCTAGCTGCAGA
AGTTCCTCTCTCAAAATGAACTGATGTTACCAGTTTCTTGTATATTCCTCATGAGAATGT
TCTTGTAAATACAAGTAAGTAAGTGTGTATACATGAAGGGTATTTGACTCAAAGTGTAAT
ACTGACATAGCAATCTTGTTTAAAAAAGATAGGAGGGAGAGCATAATGCACAAAATCAGT
TAGGAAGCTACTGTAATAGTCTGAGTTAGAATGGGCTTTAACTAGCTAGGGCACTGGAAA
GTAGTTGGGCTTCAAACACATTGCAGACATACAATCAACAGGACTTACTGATAGTTGGTC
TAAGAGGGTGAAGGAAAAAGAGGAATTGAAGTTGATTTTCAGGTTTTGTTTCTGGAAGTT
CTAAGATTTCTAGCATAGAAGTGTGCGGTTGGGTGGGCTGCCATTAATCAGATTAGGAAA
TGCAAGAGAAGAATCAACTCTGGGAATTAAAAACAGGGGCCTGCTTGATACATGAGGCAT
TTCAGAGGCAGAATCATCTGGCTCACAGGATGCTTGCATCCAGATGTCCTTTATCGAGTC
CTGAGTGCTAGGGCAGTGAGTCTTGTTAGAATCACTTGTGCAGTTTGGATTTTCAATTTA
ATTTTATTAGTTGTTTTTGTTTTTTTGTTTTGGCTA------------------------
------------------------------------------------------------
------------------------TTTTATACTTTGCTGGAAGGCCTAGGACTACCCTGG
GCATACTGACTCAGGATGTGGGGCTTAGGTTCCACAGGTCATCTCAATGTGCAGTAAGAC
TTCAGAACAGTGTGCCAGGGACCAGGCCAGCACTTGGAGATGAAAGATGTTACCAATGTG
AAAGAGAATTAGCTGGGAAGAGGGTCACAATATGAAGGGGGAGAAAGGGGATGGGAAAGT
CATGATTGAGGTGCTGCTATTATTATAGTGACTTAAGGAAGTGGTTAGGCCCACTAACAT
TTATGTGTTAATAGTTACTATAAGATTTCCTGTTTATTTTTTATTTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGGCTCGAGTGAGAATTGATGTTTATAAACAGGTTAAGACCAAATTGTTGAAGGAAACA
GTTTCCATGTTGGGTATTGTTTTTGGTTGTTGTTGGTTTGGGTAGAAAGCTATAGAAGAT
GTTTTTGCTCTTGTTTTGGGTTTAGCTTGGTTGGTTGGTTTTTGGTTTTGTTGGCCGTAC
CCGAGGCATGTGGAATCAAATCCATGCCACAGCTTTGACACCCGGGATCCTTAACCCATT
GTGCCACCAGGGAACTCTTGGTTTGTTTGTTTTTAAAAAGTTAGCGCATTTAGATGGTAC
AAAATTCAAAAGGGTGCACACAGTGAATTCTCCCTCTCATCCTTGTCTCCTAGCTGCAGA
AGTTCCTCTCTCAAAATGAACTGATGTTACCAGTTTCTTGTATATTCCTCATGAGAATGT
TCTTGTAAATACAAGTAAGTAAGTGTGTATACATGAAGGGTATTTGACTCAAAGTGTAAT
ACTGACATAGCAATCTTGTTTAAAAAAGATAGGAGGGAGAGCATAATGCACAAAATCAGT
TAGGAAGCTACTGTAATAGTCTGAGTTAGAATGGGCTTTAACTAGCTAGGGCACTGGAAA
GTAGTTGGGCTTCAAACACATTGCAGACATACAATCAACAGGACTTACTGATAGTTGGTC
TAAGAGGGTGAAGGAAAAAGAGGAATTGAAGTTGATTTTCAGGTTTTGTTTCTGGAAGTT
CTAAGATTTCTAGCATAGAAGTGTGCGGTTGGGTGGGCTGCCATTAATCAGATTAGGAAA
TGCAAGAGAAGAATCAACTCTGGGAATTAAAAACAGGGGCCTGCTTGATACATGAGGCAT
TTCAGAGGCAGAATCATCTGGCTCACAGGATGCTTGCATCCAGATGTCCTTTATCGAGTC
CTGAGTGCTAGGGCAGTGAGTCTTGTTAGAATCACTTGTGCAGTTTGGATTTTCAATTTA
ATTTTATTAGTTGTTTTTGTTTTTTTGTTTTGGCTA------------------------
------------------------------------------------------------
------------------------TTTTATACTTTGCTGGAAGGCCTAGGACTACCCTGG
GCATACTGACTCAGGATGTGGGGCTTAGGTTCCACAGGTCATCTCAATGTGCAGTAAGAC
TTCAGAACAGTGTGCCAGGGACCAGGCCAGCACTTGGAGATGAAAGATGTTACCAATGTG
AAAGAGAATTAGCTGGGAAGAGGGTCACAATATGAAGGGGGAGAAAGGGGATGGGAAAGT
CATGATTGAGGTGCTGCTATTATTATAGTGACTTAAGGAAGTGGTTAGGCCCACTAACAT
TTATGTGTTAATAGTTACTATAAGATTTCCTGTTTATTTTTTATTTAA
|
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8-156, gnl|bosTau2|chr17 (30169637-30169781) |
|
8-156, gnl|canFam2|chr26 (11391888-11392138) |
|
8-156, gnl|dasNov1|scaffold_9338 (104067-104301) |
|
8-156, gnl|echTel1|scaffold_312394 (91080-90878) |
|
8-156, gnl|hg17|chr12 (109468378-109468600) |
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8-156, gnl|Hg17|chr12 (109468610-109468478) |
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8-156, gnl|loxAfr1|scaffold_7637 (39047-39260) |
|
8-156, gnl|oryCun1|scaffold_213131 (39759-39980) |
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8-156, gnl|panTro1|chr10 (112047234-112047453) |
|
8-156, gnl|rheMac2|chr11 (111507146-111507370) |
| |
|
292-953, gnl|bosTau2|chr17 (30169820-30170495) |
|
292-953, gnl|Hg17|chr12 (109468439-109467835) |
| |
|
989-1308, gnl|bosTau2|chr17 (30170486-30170790) |
|
989-1308, gnl|Hg17|chr12 (109467834-109467541) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
8-156, gnl|bosTau2|chr17 (30169637-30169781) |
|
8-156, gnl|canFam2|chr26 (11391888-11392138) |
|
8-156, gnl|dasNov1|scaffold_9338 (104067-104301) |
|
8-156, gnl|echTel1|scaffold_312394 (91080-90878) |
|
8-156, gnl|hg17|chr12 (109468378-109468600) |
|
8-156, gnl|Hg17|chr12 (109468610-109468478) |
|
8-156, gnl|loxAfr1|scaffold_7637 (39047-39260) |
|
8-156, gnl|oryCun1|scaffold_213131 (39759-39980) |
|
8-156, gnl|panTro1|chr10 (112047234-112047453) |
|
8-156, gnl|rheMac2|chr11 (111507146-111507370) |
| |
|
292-953, gnl|bosTau2|chr17 (30169820-30170495) |
|
292-953, gnl|Hg17|chr12 (109468439-109467835) |
| |
|
989-1308, gnl|bosTau2|chr17 (30170486-30170790) |
|
989-1308, gnl|Hg17|chr12 (109467834-109467541) |
