Non-Coding RNA Search

Ss1.1-Pig4-TMW8025C15.5

Sequence:


               
               GGTGCAGGCCCCGCACCCGCCGTCTCCCCTCTTACCGGCCGCGGGCCCGCGCCATGGCTG
CTTCGCCCGGCTCGGGCAGCGCCAACCCGCGGAAGTTCAGCGAGAAGATTGCGCTGCACA
CGCAGCGGCAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGT
CGCGGGTTCAGTTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCACGGAGGGTCCT
TACCCAACGTGAGCCAGCTGCGGAGCAGTGCCCCTGACTTTCAGGCCCTTGGCAAATGAG
CACCCCCAACTCTTCTGATCGCAGGACCTGCCTCGCCCCCCCGCCTCCCGACTAAGAGAC
TGAAGTCCTGCCCTGAAACAGTGACCAAGGCACTTTCCTGAGGTCAGCCACCCATTCGGT
CTTTCTGCTCGGATTCCAGAGTGCCCCAGATTTCTCGTTGTCCCGCAGTGCCTACAGTCA
GGAAGCCTCTGTTCTGGATACTTATCTCAGCAAATGGCCACTCTGTTCTTCCAGTTAACT
CAGGCCAAAACCTTGCAGTCATCCCTAACTCCTCCCATTCTCTCACCTCCCACATCTGAG
CCTTCAGCAAATCCTTGGTTCTATGTTAAAAATATATCCAGCATCTGGAGAAAGACAAAC
ACCATGTGATACCATTTATATCTGGAATCTAATATATGACACAAATGAACCTCTCTGCAG
AAAAGAAACAAACTCATGGACATGGAGAACAGACTTGTGGTTCCAAGAGGGAGGGGGAAG
GAGTAGGAGGGCCTGGGATTGGGGGTTAGTAGATGCAAACTGTAGCATTTGGAATGGGTA
AGCAATGAGATGCTGTATAGCACAGGGAACTATATCTGATCGCTTGTGATGGAACATGAT
AGAGGATAATGTGAAAAAAAAGAATGTATATGGATGTATGGCTGTGTCACTTTGCTATGC
AGCAGAAATTGACAGAACATCGTAAATCAGCTAAAATAAAAAATTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCAGGCCCCGCACCCGCCGTCTCCCCTCTTACCGGCCGCGGGCCCGCGCCATGGCTG
CTTCGCCCGGCTCGGGCAGCGCCAACCCGCGGAAGTTCAGCGAGAAGATTGCGCTGCACA
CGCAGCGGCAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGT
CGCGGGTTCAGTTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCACGGAGGGTCCT
TACCCAACGTGAGCCAGCTGCGGAGCAGTGCCCCTGACTTTCAGGCCCTTGGCAAATGAG
CACCCCCAACTCTTCTGATCGCAGGACCTGCCTCGCCCCCCCGCCTCCCGACTAAGAGAC
TGAAGTCCTGCCCTGAAACAGTGACCAAGGCACTTTCCTGAGGTCAGCCACCCATTCGGT
CTTTCTGCTCGGATTCCAGAGTGCCCCAGATTTCTCGTTGTCCCGCAGTGCCTACAGTCA
GGAAGCCTCTGTTCTGGATACTTATCTCAGCAAATGGCCACTCTGTTCTTCCAGTTAACT
CAGGCCAAAACCTTGCAGTCATCCCTAACTCCTCCCATTCTCTCACCTCCCACATCTGAG
CCTTCAGCAAATCCTTGGTTCTATGTTAAAAATATATCCAGCATCTGGAGAAAGACAAAC
ACCATGTGATACCATTTATATCTGGAATCTAATATATGACACAAATGAACCTCTCTGCAG
AAAAGAAACAAACTCATGGACATGGAGAACAGACTTGTGGTTCCAAGAGGGAGGGGGAAG
GAGTAGGAGGGCCTGGGATTGGGGGTTAGTAGATGCAAACTGTAGCATTTGGAATGGGTA
AGCAATGAGATGCTGTATAGCACAGGGAACTATATCTGATCGCTTGTGATGGAACATGAT
AGAGGATAATGTGAAAAAAAAGAATGTATATGGATGTATGGCTGTGTCACTTTGCTATGC
AGCAGAAATTGACAGAACATCGTAAATCAGCTAAAATAAAAAATTGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47209767|emb|CAF93858.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47209767|emb|CAF93858.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               615-732, + strand, RNAz p=0.846669
               

               
               647-966, - strand, RNAz p=0.951806

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               615-732, + strand, RNAz p=0.846669
               

               
               647-966, - strand, RNAz p=0.951806

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               168-285, gnl|bosTau2|chr21 (12471005-12470887)
               

               
               168-285, gnl|Hg17|chr15 (88884256-88884374)
               

               
               168-285, gnl|Mm7|chr7 (76548906-76548788)
               


               
               615-997, gnl|bosTau2|chr10 (29380176-29379805)
               


               
               647-996, gnl|bosTau2|chr10 (53674642-53674992)
               


               
               648-993, gnl|bosTau2|chr10 (31027830-31027479)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-285, gnl|bosTau2|chr21 (12471005-12470887)
               

               
               168-285, gnl|Hg17|chr15 (88884256-88884374)
               

               
               168-285, gnl|Mm7|chr7 (76548906-76548788)
               


               
               615-997, gnl|bosTau2|chr10 (29380176-29379805)
               


               
               647-996, gnl|bosTau2|chr10 (53674642-53674992)
               


               
               648-993, gnl|bosTau2|chr10 (31027830-31027479)

	615-732, + strand, RNAz p=0.846669
	647-966, - strand, RNAz p=0.951806

	168-285, gnl\|bosTau2\|chr21 (12471005-12470887)
	168-285, gnl\|Hg17\|chr15 (88884256-88884374)
	168-285, gnl\|Mm7\|chr7 (76548906-76548788)

	615-997, gnl\|bosTau2\|chr10 (29380176-29379805)

	647-996, gnl\|bosTau2\|chr10 (53674642-53674992)

	648-993, gnl\|bosTau2\|chr10 (31027830-31027479)