Non-Coding RNA Search

Ss1.1-Pig4-TMW8025E18.3

Sequence:


               
               AACATTTTTACTTATCCTTTGCCCTTTTCCTGACTACGGGTTAGAGGTAGTTAAGAGATC
AGAGTTTTGCTAGCACTTTCCAGACCCTTTTTGTGAAGGAAGATGGCAATCTTCTGCAAC
TGGGAGTTTTGGTGGCTTACTGCCAGGGGAGTTTGCTCAGTCTGATCTGTGGAAAGAAGC
AAACTATTGGATCTGAGTAGCTAAGAGGTTTCAGAATTCTTCATGAAAGTGAAAATGGTA
CTTCTTAACGTGTAAGAGTCATCTTGGTTGCATTAGTGGGAAAAATGAAGTGCACTTAAA
AGTTTTTTTTTTTTTTTTTTTATCTACAAAAGATCCAATGGATTAAGGGGAGACTTGCAT
TTTATTTCAGTTCTTTTCAAAAGATACTGAATTTTTTCAATATTGCAATTATTATACCTA
AACAAATTCTCTTTCACAACTGAGCCTGACTTCCAATGGTGCCAGTGTTGCCAATGAAAT
AATAATGTTTACACAAGTGCTATAGGTAAGAGCAGGGCATAAGCTAAACTGAAGTTGTGA
AGAGATGGAGTTAGATGAAATGAAATAATTTAAAGAAAGACGAAAACTTCCAATAAAACA
GGCTTAACTGTACATGATGGGATAAATCTAGCAAAGAGAAAGTAAGTGAGAAAAAGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATTTTTACTTATCCTTTGCCCTTTTCCTGACTACGGGTTAGAGGTAGTTAAGAGATC
AGAGTTTTGCTAGCACTTTCCAGACCCTTTTTGTGAAGGAAGATGGCAATCTTCTGCAAC
TGGGAGTTTTGGTGGCTTACTGCCAGGGGAGTTTGCTCAGTCTGATCTGTGGAAAGAAGC
AAACTATTGGATCTGAGTAGCTAAGAGGTTTCAGAATTCTTCATGAAAGTGAAAATGGTA
CTTCTTAACGTGTAAGAGTCATCTTGGTTGCATTAGTGGGAAAAATGAAGTGCACTTAAA
AGTTTTTTTTTTTTTTTTTTTATCTACAAAAGATCCAATGGATTAAGGGGAGACTTGCAT
TTTATTTCAGTTCTTTTCAAAAGATACTGAATTTTTTCAATATTGCAATTATTATACCTA
AACAAATTCTCTTTCACAACTGAGCCTGACTTCCAATGGTGCCAGTGTTGCCAATGAAAT
AATAATGTTTACACAAGTGCTATAGGTAAGAGCAGGGCATAAGCTAAACTGAAGTTGTGA
AGAGATGGAGTTAGATGAAATGAAATAATTTAAAGAAAGACGAAAACTTCCAATAAAACA
GGCTTAACTGTACATGATGGGATAAATCTAGCAAAGAGAAAGTAAGTGAGAAAAAGTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-191, + strand, RNAz p=0.786825

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-191, + strand, RNAz p=0.786825

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               73-660, gnl|bosTau2|chr12 (10658475-10657898)
               

               
               73-660, gnl|Hg17|chr13 (50948486-50947015)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-660, gnl|bosTau2|chr12 (10658475-10657898)
               

               
               73-660, gnl|Hg17|chr13 (50948486-50947015)

	73-660, gnl\|bosTau2\|chr12 (10658475-10657898)
	73-660, gnl\|Hg17\|chr13 (50948486-50947015)