Ss1.1-Pig4-TMW8025E20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGAGGGGGAGCCTGGGGTTCCGACGTCGCCGCGGAGGGAGCGAGCCCGAACAGGATCC TTGACGAGCACCCCTACTTGGCGCTCTCCCCGTGTCTAATAGGGGAGACTCTGCGGCCTG AGGGAGCCCTGCGGCCCGCACCCCGGCGCAAGCGCAGCCCCGGCCAGTCGGGCCTCAGCC GGAGCAGCAGTTGTGACCCCTGATTCCAGCAGAATGGCCCAATGGAATCAGCTACAGCAG CTGGACACACGGTACCTGGAGCAGCTTCATCAGCTGTACAGCGACAGCTTCCCGATGGAG CTCCGGCAGTTTCTGGCCCCTTGGATTGAGAGTCAAGATTGGGCATATGCAGCCAGCAAA GAATCCCACGCCACTTTGGTGTTTCATAATCTCTTGGGTGAAATTGACCAGCAGTATAGC CGCTTCCTGCAGGAGTCCAATGTTCTCTATCAGCACAACCTGCGAAGAATCAAGCAGTTC CTTCAGAGCAGATATCTTGAGAAGCCAATGGAGATTGCCCGAATTGTGGCCCGGTGCCTG TGGGAAGAGTCCCGCCTCCTCCAGACTGCAGCCACTGCAGCCCAGCAAGGGGGCCAGGCC AACCACCCCACAGCCGCTGTGGTGACAGAGAAGCAGCAGATGCTGGAGCAGCACCTTCAG GATGTTCGCAAGCGTGTCCAGGATCTGGAACAGAAAATGAAAGTGGTGGAGAATCTCCAG GATGACTTTGATTTCAACTACAAAACCCTCAAGAGTCAAGGAGATATGCAAGACCTGAAT GGAAACAACCAGTCAGTGACCAGGCAGAAGATGCAGCAGCTGGAGCAGATGCTCACTGCG CTGGACCAGATGCGGCGAAGCATCGTGAGTGAGTTGGCGGGGCTTTTGTCAGCTATGGAG TATGTGCAGAAAACTCTCACGGATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATT GCGTGCATTGGAGGCCCTCCCAACATCTGCCTGGATCGGCTAGAAAACTGGATAACCTCA TTAGCAGAATCTCAACTTCAGACCCGCCAACAAATTAAGAAACTAGAGGAGCTGCAGCAG AAAGTGAGCTACAAAGGGGACCCCATTGTACAGCACCGGCCCATGCTGGAGGAGAGAATC GTGGAGCTGTTCAGAAACTTGATGAAAAGTGCCTTCGTGGTGGAGCGACAGCCCTGCATG CCTATGCACCCTGACCGGCCATTAGTCATCAAGACCGGTGTCCAGTTTACAACGAAAGTC AGATTGCTGGTCAAATTCCCTGAGCTAAACTATCAGCTTAAAATTAAAGTGTGCATTGAC AAAGACTCCGGGGACGTCGCGGCTCTCAGAGGATCCCGGAAATTTAACATCCTGGGCACC AACACGAAAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGAGGGGGAGCCTGGGGTTCCGACGTCGCCGCGGAGGGAGCGAGCCCGAACAGGATCC TTGACGAGCACCCCTACTTGGCGCTCTCCCCGTGTCTAATAGGGGAGACTCTGCGGCCTG AGGGAGCCCTGCGGCCCGCACCCCGGCGCAAGCGCAGCCCCGGCCAGTCGGGCCTCAGCC GGAGCAGCAGTTGTGACCCCTGATTCCAGCAGAATGGCCCAATGGAATCAGCTACAGCAG CTGGACACACGGTACCTGGAGCAGCTTCATCAGCTGTACAGCGACAGCTTCCCGATGGAG CTCCGGCAGTTTCTGGCCCCTTGGATTGAGAGTCAAGATTGGGCATATGCAGCCAGCAAA GAATCCCACGCCACTTTGGTGTTTCATAATCTCTTGGGTGAAATTGACCAGCAGTATAGC CGCTTCCTGCAGGAGTCCAATGTTCTCTATCAGCACAACCTGCGAAGAATCAAGCAGTTC CTTCAGAGCAGATATCTTGAGAAGCCAATGGAGATTGCCCGAATTGTGGCCCGGTGCCTG TGGGAAGAGTCCCGCCTCCTCCAGACTGCAGCCACTGCAGCCCAGCAAGGGGGCCAGGCC AACCACCCCACAGCCGCTGTGGTGACAGAGAAGCAGCAGATGCTGGAGCAGCACCTTCAG GATGTTCGCAAGCGTGTCCAGGATCTGGAACAGAAAATGAAAGTGGTGGAGAATCTCCAG GATGACTTTGATTTCAACTACAAAACCCTCAAGAGTCAAGGAGATATGCAAGACCTGAAT GGAAACAACCAGTCAGTGACCAGGCAGAAGATGCAGCAGCTGGAGCAGATGCTCACTGCG CTGGACCAGATGCGGCGAAGCATCGTGAGTGAGTTGGCGGGGCTTTTGTCAGCTATGGAG TATGTGCAGAAAACTCTCACGGATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATT GCGTGCATTGGAGGCCCTCCCAACATCTGCCTGGATCGGCTAGAAAACTGGATAACCTCA TTAGCAGAATCTCAACTTCAGACCCGCCAACAAATTAAGAAACTAGAGGAGCTGCAGCAG AAAGTGAGCTACAAAGGGGACCCCATTGTACAGCACCGGCCCATGCTGGAGGAGAGAATC GTGGAGCTGTTCAGAAACTTGATGAAAAGTGCCTTCGTGGTGGAGCGACAGCCCTGCATG CCTATGCACCCTGACCGGCCATTAGTCATCAAGACCGGTGTCCAGTTTACAACGAAAGTC AGATTGCTGGTCAAATTCCCTGAGCTAAACTATCAGCTTAAAATTAAAGTGTGCATTGAC AAAGACTCCGGGGACGTCGCGGCTCTCAGAGGATCCCGGAAATTTAACATCCTGGGCACC AACACGAAAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 187-1169, + strand, RNAz p=0.731934 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 187-1169, + strand, RNAz p=0.731934 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 2-174, gnl|bosTau2|chr13 (61026280-61026107) | |
| 2-174, gnl|Hg17|chr17 (37794011-37793841) | |
| 2-174, gnl|Mm7|chr11 (101048483-101048311) | |
| 187-342, gnl|bosTau2|chr19 (36842479-36842324) | |
| 187-342, gnl|Hg17|chr17 (37754087-37753932) | |
| 187-342, gnl|Mm7|chr11 (101020427-101020272) | |
| 484-585, gnl|bosTau2|chr19 (36840024-36839923) | |
| 484-585, gnl|canFam2|chr9 (23902114-23901976) | |
| 484-585, gnl|danRer3|chr3 (7061751-7061616) | |
| 484-585, gnl|echTel1|scaffold_231531 (7436-7565) | |
| 484-585, gnl|fr1|chrUn (208894243-208894129) | |
| 484-585, gnl|galGal2|chr27_random (269883-269774) | |
| 484-585, gnl|hg17|chr17 (37751078-37751220) | |
| 484-585, gnl|Hg17|chr17 (37751204-37751103) | |
| 484-585, gnl|loxAfr1|scaffold_133663 (722-580) | |
| 484-585, gnl|mm7|chr11 (101017006-101017143) | |
| 484-585, gnl|Mm7|chr11 (101017131-101017030) | |
| 484-585, gnl|monDom2|scaffold_18 (52690946-52691085) | |
| 484-585, gnl|oryCun1|scaffold_170179 (15690-15551) | |
| 484-585, gnl|panTro1|chr19 (40954044-40954186) | |
| 484-585, gnl|rheMac2|chr16 (52458575-52458717) | |
| 484-585, gnl|rn3|chr10 (89857513-89857654) | |
| 484-585, gnl|tetNig1|chrUn_random (162503480-162503601) | |
| 484-585, gnl|xenTro1|scaffold_1084 (204555-204432) | |
| 1010-1169, gnl|bosTau2|chr19 (36827505-36827346) | |
| 1010-1169, gnl|Hg17|chr17 (37739594-37739435) | |
| 1010-1169, gnl|Mm7|chr11 (101012802-101012643) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-174, gnl|bosTau2|chr13 (61026280-61026107) | |
| 2-174, gnl|Hg17|chr17 (37794011-37793841) | |
| 2-174, gnl|Mm7|chr11 (101048483-101048311) | |
| 187-342, gnl|bosTau2|chr19 (36842479-36842324) | |
| 187-342, gnl|Hg17|chr17 (37754087-37753932) | |
| 187-342, gnl|Mm7|chr11 (101020427-101020272) | |
| 484-585, gnl|bosTau2|chr19 (36840024-36839923) | |
| 484-585, gnl|canFam2|chr9 (23902114-23901976) | |
| 484-585, gnl|danRer3|chr3 (7061751-7061616) | |
| 484-585, gnl|echTel1|scaffold_231531 (7436-7565) | |
| 484-585, gnl|fr1|chrUn (208894243-208894129) | |
| 484-585, gnl|galGal2|chr27_random (269883-269774) | |
| 484-585, gnl|hg17|chr17 (37751078-37751220) | |
| 484-585, gnl|Hg17|chr17 (37751204-37751103) | |
| 484-585, gnl|loxAfr1|scaffold_133663 (722-580) | |
| 484-585, gnl|mm7|chr11 (101017006-101017143) | |
| 484-585, gnl|Mm7|chr11 (101017131-101017030) | |
| 484-585, gnl|monDom2|scaffold_18 (52690946-52691085) | |
| 484-585, gnl|oryCun1|scaffold_170179 (15690-15551) | |
| 484-585, gnl|panTro1|chr19 (40954044-40954186) | |
| 484-585, gnl|rheMac2|chr16 (52458575-52458717) | |
| 484-585, gnl|rn3|chr10 (89857513-89857654) | |
| 484-585, gnl|tetNig1|chrUn_random (162503480-162503601) | |
| 484-585, gnl|xenTro1|scaffold_1084 (204555-204432) | |
| 1010-1169, gnl|bosTau2|chr19 (36827505-36827346) | |
| 1010-1169, gnl|Hg17|chr17 (37739594-37739435) | |
| 1010-1169, gnl|Mm7|chr11 (101012802-101012643) |