Non-Coding RNA Search

Ss1.1-Pig4-TMW8025I13.3

Sequence:


               
               GAACTTAGTGCTTACAAGAGAGAGGTTCCGATTTGAACATGAGACAGGGTTCTCTACAGA
AACTAGCAATATCCATAAGTCTTCGACAAGGGAACCTCCATATGCCATGGGTGAGGCCCT
AAAGACACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACTAAAGTGTGA
AATGACCTCTCTCATAAGGATTTTTCATTGGAAAAGCTTATAATAGGAAAAGATTAGAAA
TAGGTCCAAAGGCCCATCACATGAGTTGTGGTTAAATAAACGACACATTTCTACAAATAC
CACATTGCAAATAGCAGCTATTCATTAAAAAGTGTCAAAGTTGATTCCAGGCCTGGGACT
GGAAATGCAAGATGAGCCCGAAGCGTCCTCTGCCAGCAAGTAAGCAAGTAGTTGAACAAA
CTAACAAACAAAATCATAGGGGTGTTTTGGAAGGTTACAGGCGCCAAACCCAGAGAGCTC
CCTGTGGCCGAAGCTGGAACAACTTGGGCAACAAATTAAAGAAAATAGGACTGGATTCTG
TCTCAGAGAGTGAAGTAAATATTCATGAGTCCATCTGATATAAATAAATAACCACATAAA
AAATAAATGGGAGGAAAGGACAGACTTTCCTTACAGAAAAATCACAATTAATGAATGTAG
AAGGAAGGAGAGAAATAGAAAATCACCGTTAGGACAGCACAGTGATAATTGCTACAGGCA
AGATCTAAGAGGAAGGCTGAAATTCATGGGTAAAAGGTTATTTTCACAGTTTCAAAGAAT
CTCTTCCAAATATTAATTAACTACAAAGGGGGAAAAGGGGTAACTTTATAGGGTAGAGTC
TGGGCAGATGCTTTCGTGGTTAACATCATCCATTAATACACAGCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTTAGTGCTTACAAGAGAGAGGTTCCGATTTGAACATGAGACAGGGTTCTCTACAGA
AACTAGCAATATCCATAAGTCTTCGACAAGGGAACCTCCATATGCCATGGGTGAGGCCCT
AAAGACACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACTAAAGTGTGA
AATGACCTCTCTCATAAGGATTTTTCATTGGAAAAGCTTATAATAGGAAAAGATTAGAAA
TAGGTCCAAAGGCCCATCACATGAGTTGTGGTTAAATAAACGACACATTTCTACAAATAC
CACATTGCAAATAGCAGCTATTCATTAAAAAGTGTCAAAGTTGATTCCAGGCCTGGGACT
GGAAATGCAAGATGAGCCCGAAGCGTCCTCTGCCAGCAAGTAAGCAAGTAGTTGAACAAA
CTAACAAACAAAATCATAGGGGTGTTTTGGAAGGTTACAGGCGCCAAACCCAGAGAGCTC
CCTGTGGCCGAAGCTGGAACAACTTGGGCAACAAATTAAAGAAAATAGGACTGGATTCTG
TCTCAGAGAGTGAAGTAAATATTCATGAGTCCATCTGATATAAATAAATAACCACATAAA
AAATAAATGGGAGGAAAGGACAGACTTTCCTTACAGAAAAATCACAATTAATGAATGTAG
AAGGAAGGAGAGAAATAGAAAATCACCGTTAGGACAGCACAGTGATAATTGCTACAGGCA
AGATCTAAGAGGAAGGCTGAAATTCATGGGTAAAAGGTTATTTTCACAGTTTCAAAGAAT
CTCTTCCAAATATTAATTAACTACAAAGGGGGAAAAGGGGTAACTTTATAGGGTAGAGTC
TGGGCAGATGCTTTCGTGGTTAACATCATCCATTAATACACAGCAGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               550-667, - strand, RNAz p=0.999841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               550-667, - strand, RNAz p=0.999841

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               167-841, gnl|bosTau2|chr15 (40743320-40742657)
               

               
               167-841, gnl|Hg17|chr11 (36186030-36187082)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-841, gnl|bosTau2|chr15 (40743320-40742657)
               

               
               167-841, gnl|Hg17|chr11 (36186030-36187082)

	167-841, gnl\|bosTau2\|chr15 (40743320-40742657)
	167-841, gnl\|Hg17\|chr11 (36186030-36187082)