Non-Coding RNA Search

Ss1.1-Pig4-TMW8025K05.3

Sequence:


               
               GGACAATACAAAGGCTGGGTGTGTAAATAGCTGCACTGAAGTGTTTCATAATCACTAATG
TAAGCCTTTGGGTGCCAAGAAAGGGTGTATTTATGGAAAAGGAAGTTGGGGAGAGGTTCA
GAGGGTTGGCTTTTGAGCTGAGCTTTCAAAAGTTTCTTGCTTTAGGCCAAAAGGTCTCTT
GGAACAGGACAAGGTGATGTTAAAAGGAGGAGGGGCTGTGGGTGGGGGCAGCTTGAAAGC
TATTATCCCCTTTATGACATTGCCTCAGGCACATGGCTATTTCCTAGTTTCCAGCGAATG
TAAAGGAGCTCACAGTGAAGCTGGATGTCCACTAGAATTTGGCAGTGGCTCACTCCACCC
TCACTGGACAGCACTGCCTGTGTGAGCCAGAACTCTGATTTGTCACAGGTCTATCTCCCA
AGGTTTAGAGCCCATAAAACCAAATCTACCAGTTGATGAGTACTGACTGGATGGTTGCCA
ATCAGCTAACCCTCTCCTGAGGACATGCCTTTTGGAAAGCCCAGTCACCAGCCAAAGGTT
TGGAAAGGGTGATCTCAGTGGTAGATGTTGGCTGGACAGCTGAGCAGATGGCCCATCTTT
GCTGTATGAGCAGATGTACAGTGACCAAACAAAGCTGGATTCTTAGATGCTGCTAGAGTT
GCCCTCTCAAACTGTCCATTTGGTATTTACATGACCAATAGACAACAGTTCTGAGTGACA
ATGTGGACTTGTGTTTAATACTGTTTAAGTGTGGAGCTTTGGAGTTGGACCTGGGGTCCA
GTGCTGCCTCTGCCGTGTGATTTAAGGCAAATGATTTAACGTCTTAGTGCCATATTTATC
TCACCTGTGAGATTTGAGGGTAACACTTTCCTAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAATACAAAGGCTGGGTGTGTAAATAGCTGCACTGAAGTGTTTCATAATCACTAATG
TAAGCCTTTGGGTGCCAAGAAAGGGTGTATTTATGGAAAAGGAAGTTGGGGAGAGGTTCA
GAGGGTTGGCTTTTGAGCTGAGCTTTCAAAAGTTTCTTGCTTTAGGCCAAAAGGTCTCTT
GGAACAGGACAAGGTGATGTTAAAAGGAGGAGGGGCTGTGGGTGGGGGCAGCTTGAAAGC
TATTATCCCCTTTATGACATTGCCTCAGGCACATGGCTATTTCCTAGTTTCCAGCGAATG
TAAAGGAGCTCACAGTGAAGCTGGATGTCCACTAGAATTTGGCAGTGGCTCACTCCACCC
TCACTGGACAGCACTGCCTGTGTGAGCCAGAACTCTGATTTGTCACAGGTCTATCTCCCA
AGGTTTAGAGCCCATAAAACCAAATCTACCAGTTGATGAGTACTGACTGGATGGTTGCCA
ATCAGCTAACCCTCTCCTGAGGACATGCCTTTTGGAAAGCCCAGTCACCAGCCAAAGGTT
TGGAAAGGGTGATCTCAGTGGTAGATGTTGGCTGGACAGCTGAGCAGATGGCCCATCTTT
GCTGTATGAGCAGATGTACAGTGACCAAACAAAGCTGGATTCTTAGATGCTGCTAGAGTT
GCCCTCTCAAACTGTCCATTTGGTATTTACATGACCAATAGACAACAGTTCTGAGTGACA
ATGTGGACTTGTGTTTAATACTGTTTAAGTGTGGAGCTTTGGAGTTGGACCTGGGGTCCA
GTGCTGCCTCTGCCGTGTGATTTAAGGCAAATGATTTAACGTCTTAGTGCCATATTTATC
TCACCTGTGAGATTTGAGGGTAACACTTTCCTAGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               176-266, + strand, RNAz p=0.964279
               

               
               450-605, + strand, RNAz p=0.970748

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-266, + strand, RNAz p=0.964279
               

               
               450-605, + strand, RNAz p=0.970748

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               203-282, + strand, RNAmicro p=0.990067

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               203-282, + strand, RNAmicro p=0.990067

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               24-266, gnl|bosTau2|chr22 (11950610-11950847)
               

               
               24-266, gnl|Hg17|chr3 (9824656-9825175)
               


               
               268-869, gnl|bosTau2|chr22 (11950896-11951497)
               

               
               268-869, gnl|Hg17|chr3 (9825223-9825775)
               

               
               268-869, gnl|Mm7|chr6 (113551627-113552226)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-266, gnl|bosTau2|chr22 (11950610-11950847)
               

               
               24-266, gnl|Hg17|chr3 (9824656-9825175)
               


               
               268-869, gnl|bosTau2|chr22 (11950896-11951497)
               

               
               268-869, gnl|Hg17|chr3 (9825223-9825775)
               

               
               268-869, gnl|Mm7|chr6 (113551627-113552226)

	176-266, + strand, RNAz p=0.964279
	450-605, + strand, RNAz p=0.970748

	24-266, gnl\|bosTau2\|chr22 (11950610-11950847)
	24-266, gnl\|Hg17\|chr3 (9824656-9825175)

	268-869, gnl\|bosTau2\|chr22 (11950896-11951497)
	268-869, gnl\|Hg17\|chr3 (9825223-9825775)
	268-869, gnl\|Mm7\|chr6 (113551627-113552226)