Non-Coding RNA Search

Ss1.1-Pig4-TMW8025L09.3

Sequence:


               
               TGGCAGTGCCATGCTACTGGGAACCGTTCCCCGGAGGGCAACCCAGGACCCAGCGGGGCC
GCTCCCTCGTTCTTTCTCAGCCCTTGGAGAATGGACAAGACGGAAAATCAAACTTTATCC
CCCTCTGTGACTTCCTGCTAGTGGGCTTGGGGAACAGCACGCTTGCGATGGATGCTGCAT
TGCTCAGGAGGCAAGCTTCATCCCTCTCAGGTCCTTAAAGGTCCTCGTGGTCCTTTTGGA
GGGCTGATTTATAAGCTTGTTAACGCGTGCCTGAAGAAGGAGGGGTGGGCAGCAGGCAGA
GGGGAAAGTGAGTATGACAAGTTGTTCACAGAGGCAGGGATTTGGTGGTTGTATTAACCA
GTTATTGCTGGATTTCATTGGCTGGCAACGCACGGGAGTTTCTATTTGAACAATCTTCTT
TGGGTGTGTGTGTGTGTGTGTATTTCTTTTTCAGTTGCAAGAGATCAACTTGGCATGGAG
TTCTTGACCTAACAAGTCAGCAGGTTCTCTTCCTTTGGACTTTCTAGACCCGTATTGTTG
GTCTCTGGCCGACTCCAAGAGAAAGACTGTAGGTTTTATTTCCTAGGGCGAGGGTGTATA
GTGTGGCAATAAGAGAATCACTGCAGACAGCCTAATAGCAGATACTAGTACCTTCAGCCC
TCAACAGATAACATCCACCTGTCTTGTTCTCACAGCTCTTGAAGGGAAGCTGAATGGAGC
TTTTCAGAGAATACCCCAAGACTGATGACAGCATAAAATTAAGTGTATGAAAGAGCAATG
AAGGGAACTAATGCTTTTTAAATGCAAGATGGTATTGTTGTTATTGGTCCTAGGTATGGA
CCCTATCCTCATTCTTGGGAGAAAATGGTATTCTTCACTGACATATTGCTTTGCTGAAGC
TTTTGGGTGAGAGCCGAGCTTTCCATAGTTCAATTTAGATTTGCATGTTTCATAGCCTCC
AGTTATGTGTTTTGTTCTCTTAAAAACATAAGGCCATCCAAAAATGGGATTGCATTCCCC
TCCCCCTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAGTGCCATGCTACTGGGAACCGTTCCCCGGAGGGCAACCCAGGACCCAGCGGGGCC
GCTCCCTCGTTCTTTCTCAGCCCTTGGAGAATGGACAAGACGGAAAATCAAACTTTATCC
CCCTCTGTGACTTCCTGCTAGTGGGCTTGGGGAACAGCACGCTTGCGATGGATGCTGCAT
TGCTCAGGAGGCAAGCTTCATCCCTCTCAGGTCCTTAAAGGTCCTCGTGGTCCTTTTGGA
GGGCTGATTTATAAGCTTGTTAACGCGTGCCTGAAGAAGGAGGGGTGGGCAGCAGGCAGA
GGGGAAAGTGAGTATGACAAGTTGTTCACAGAGGCAGGGATTTGGTGGTTGTATTAACCA
GTTATTGCTGGATTTCATTGGCTGGCAACGCACGGGAGTTTCTATTTGAACAATCTTCTT
TGGGTGTGTGTGTGTGTGTGTATTTCTTTTTCAGTTGCAAGAGATCAACTTGGCATGGAG
TTCTTGACCTAACAAGTCAGCAGGTTCTCTTCCTTTGGACTTTCTAGACCCGTATTGTTG
GTCTCTGGCCGACTCCAAGAGAAAGACTGTAGGTTTTATTTCCTAGGGCGAGGGTGTATA
GTGTGGCAATAAGAGAATCACTGCAGACAGCCTAATAGCAGATACTAGTACCTTCAGCCC
TCAACAGATAACATCCACCTGTCTTGTTCTCACAGCTCTTGAAGGGAAGCTGAATGGAGC
TTTTCAGAGAATACCCCAAGACTGATGACAGCATAAAATTAAGTGTATGAAAGAGCAATG
AAGGGAACTAATGCTTTTTAAATGCAAGATGGTATTGTTGTTATTGGTCCTAGGTATGGA
CCCTATCCTCATTCTTGGGAGAAAATGGTATTCTTCACTGACATATTGCTTTGCTGAAGC
TTTTGGGTGAGAGCCGAGCTTTCCATAGTTCAATTTAGATTTGCATGTTTCATAGCCTCC
AGTTATGTGTTTTGTTCTCTTAAAAACATAAGGCCATCCAAAAATGGGATTGCATTCCCC
TCCCCCTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               155-310, + strand, RNAz p=0.991065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-310, + strand, RNAz p=0.991065

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1031, gnl|bosTau2|chr28 (23646980-23648015)
               

               
               1-1031, gnl|Hg17|chr10 (74122513-74123609)
               

               
               1-1031, gnl|Mm7|chr10 (59134304-59133314)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1031, gnl|bosTau2|chr28 (23646980-23648015)
               

               
               1-1031, gnl|Hg17|chr10 (74122513-74123609)
               

               
               1-1031, gnl|Mm7|chr10 (59134304-59133314)

	1-1031, gnl\|bosTau2\|chr28 (23646980-23648015)
	1-1031, gnl\|Hg17\|chr10 (74122513-74123609)
	1-1031, gnl\|Mm7\|chr10 (59134304-59133314)