Non-Coding RNA Search

Ss1.1-Pig4-TMW8025L20.3

Sequence:


               
               AAAAATATAGAAACTCCTCATCAGTGAGGGGCTCTCCTCCACGAGTGATTTGTCAACCCA
GGTTCCCTCCATGCTGTGGCCTTGGACTCTGCTGCCCTCAACTCATGGTTCTGTGGTCAC
CATGCTCATCTACATCAACCTACAGAAAGGGAAAGAGCCTGGAGGACAGAGAGCACATGG
GAGAGCCTTATGGGCTAGGCTTAGAAGTGGTTACCCATCCGTTCTGCTCACCTCACTGTG
GTTAGAACTCAGTTACACACAGTCCTATCTAAGTAGGAAGGAGGCAGGGAAGTAGTGTAG
CTGCAGCCCAAGAGAAGGTTGAACTCTTTGATGATCAGCTGGCAGGTTTCCCCACCCTAA
ACCACCAAAATTGACCTTAGGTTTCTCATTACTTAAAAATGAAATATCCAATTTCATCTG
GGGTATTTTTTAAAGCCATAATTCATTTTACCATGTCGTAAAATGTATTTGTTGATTCCA
GGAATATGGTCAATGCAAAGCAATATTTTACATCAATAAGGCAAGAAGAATTCACTATTT
ACCTGCTTATAACTGTATTCTTCGCCCAGGTAAGAGATCACTCTGATTTTGTTCATTTTA
ATAATAAATGGAAAATGAGCATTTAAGTATACTATGCTATAGTATGTAGCATTTCTCCCA
TCCTTACTTCTTGTTCATTCCAAAGTCAAGTTCTTCATATATCCAACCCTCACACTGCTT
CTCTTCCCACAATTAATCTTCCTAAATAACCTGCAACAGTTCTATACTGTGTCCTATATC
AAATCCTAAATTTTTAGTCTGTCATAAATGGCATCATCTCTCTGATGGTCCCCAGGCTTC
CTTTCTAGGAATCTCTGCCCTATTTCCCTGACTACACCAATTTTGCATTCCATTCAACCA
GATGGCTCACTTTTCTGAACACACGTTGTACTTTCGAATCTCTGCATCTTGTGTGTGCCT
CTCCTTTGGCTGAGGATGCCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATATAGAAACTCCTCATCAGTGAGGGGCTCTCCTCCACGAGTGATTTGTCAACCCA
GGTTCCCTCCATGCTGTGGCCTTGGACTCTGCTGCCCTCAACTCATGGTTCTGTGGTCAC
CATGCTCATCTACATCAACCTACAGAAAGGGAAAGAGCCTGGAGGACAGAGAGCACATGG
GAGAGCCTTATGGGCTAGGCTTAGAAGTGGTTACCCATCCGTTCTGCTCACCTCACTGTG
GTTAGAACTCAGTTACACACAGTCCTATCTAAGTAGGAAGGAGGCAGGGAAGTAGTGTAG
CTGCAGCCCAAGAGAAGGTTGAACTCTTTGATGATCAGCTGGCAGGTTTCCCCACCCTAA
ACCACCAAAATTGACCTTAGGTTTCTCATTACTTAAAAATGAAATATCCAATTTCATCTG
GGGTATTTTTTAAAGCCATAATTCATTTTACCATGTCGTAAAATGTATTTGTTGATTCCA
GGAATATGGTCAATGCAAAGCAATATTTTACATCAATAAGGCAAGAAGAATTCACTATTT
ACCTGCTTATAACTGTATTCTTCGCCCAGGTAAGAGATCACTCTGATTTTGTTCATTTTA
ATAATAAATGGAAAATGAGCATTTAAGTATACTATGCTATAGTATGTAGCATTTCTCCCA
TCCTTACTTCTTGTTCATTCCAAAGTCAAGTTCTTCATATATCCAACCCTCACACTGCTT
CTCTTCCCACAATTAATCTTCCTAAATAACCTGCAACAGTTCTATACTGTGTCCTATATC
AAATCCTAAATTTTTAGTCTGTCATAAATGGCATCATCTCTCTGATGGTCCCCAGGCTTC
CTTTCTAGGAATCTCTGCCCTATTTCCCTGACTACACCAATTTTGCATTCCATTCAACCA
GATGGCTCACTTTTCTGAACACACGTTGTACTTTCGAATCTCTGCATCTTGTGTGTGCCT
CTCCTTTGGCTGAGGATGCCCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-886, - strand, RNAz p=0.967438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-886, - strand, RNAz p=0.967438

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-984, gnl|bosTau2|chr1 (50934150-50935138)
               

               
               4-984, gnl|Hg17|chr3 (187842486-187843486)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-984, gnl|bosTau2|chr1 (50934150-50935138)
               

               
               4-984, gnl|Hg17|chr3 (187842486-187843486)

	4-984, gnl\|bosTau2\|chr1 (50934150-50935138)
	4-984, gnl\|Hg17\|chr3 (187842486-187843486)