Non-Coding RNA Search

Ss1.1-Pig4-TMW8025P13.3

Sequence:


               
               CGGAAATGGATCGCATCAGGCCTGACCATAAGCTGGACTGCTGAGATGGTTATTTTTAGC
TTGACAAAAAAGTGTTTGGACTAGTCCTCGAAGAATGTTCTAATGATAAAAGTTTTGAGT
CAAAATAGAAAAACTCTGCATTCCAGGCTGAACTTTGTATATTTTTAGTGCATTTAAAAT
CGCTCTTCTGTGATATTGAGAAATTAAGTGGCTTATCATGTATATCATGTACTTAAAATG
TATTCACAAACTACTGTTGTATTTGTATAAAATATAGACAAAGATGGTATTTTTGTGTGT
GGATAAGCTCTGTAAAATAGCAATCACGTTATGAAGCTGCAGTGATACGACCTTTTAAAC
ATCCACATCCAAAGAAGCAGGCTATTTATTGTCCACTTACCCAGATATAAAATATTAATT
TGCTGCTAATTAAACAATAGTACTGCAGCTTCTTGTGGCCTACAGTGTTATGTTTGCTGT
AAGAAAAAAAGATATGTGAATTCCACAAAATATATGAATAAAATTATAGAATGGCTTTAG
ATAATGCAGCTCTTCCTGAAATTTTAATAGATGATCCATTTCTATTTGGGATAACTTTTT
TTTTTCTTCCCTTTGAGTTTTACATATTTTCTCATCTGGTAAATACAAAGTTCGAATAGC
TGGCTCCAGGACAATACTTTGTGGTTGAAATGTAAAGTTCTAGGGTTGGTTTCTTTGGTT
TTGTTTGAAAACTCTTGTACCTTTTAAAGGAAGGATAGAAATTGTAAATAAAAAAGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAATGGATCGCATCAGGCCTGACCATAAGCTGGACTGCTGAGATGGTTATTTTTAGC
TTGACAAAAAAGTGTTTGGACTAGTCCTCGAAGAATGTTCTAATGATAAAAGTTTTGAGT
CAAAATAGAAAAACTCTGCATTCCAGGCTGAACTTTGTATATTTTTAGTGCATTTAAAAT
CGCTCTTCTGTGATATTGAGAAATTAAGTGGCTTATCATGTATATCATGTACTTAAAATG
TATTCACAAACTACTGTTGTATTTGTATAAAATATAGACAAAGATGGTATTTTTGTGTGT
GGATAAGCTCTGTAAAATAGCAATCACGTTATGAAGCTGCAGTGATACGACCTTTTAAAC
ATCCACATCCAAAGAAGCAGGCTATTTATTGTCCACTTACCCAGATATAAAATATTAATT
TGCTGCTAATTAAACAATAGTACTGCAGCTTCTTGTGGCCTACAGTGTTATGTTTGCTGT
AAGAAAAAAAGATATGTGAATTCCACAAAATATATGAATAAAATTATAGAATGGCTTTAG
ATAATGCAGCTCTTCCTGAAATTTTAATAGATGATCCATTTCTATTTGGGATAACTTTTT
TTTTTCTTCCCTTTGAGTTTTACATATTTTCTCATCTGGTAAATACAAAGTTCGAATAGC
TGGCTCCAGGACAATACTTTGTGGTTGAAATGTAAAGTTCTAGGGTTGGTTTCTTTGGTT
TTGTTTGAAAACTCTTGTACCTTTTAAAGGAAGGATAGAAATTGTAAATAAAAAAGTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               352-549, - strand, RNAz p=0.872435

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-549, - strand, RNAz p=0.872435

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-780, gnl|bosTau2|chr14 (11601760-11602529)
               

               
               1-780, gnl|Hg17|chr8 (57236561-57235808)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr14 (11601760-11602529)
               

               
               1-780, gnl|Hg17|chr8 (57236561-57235808)

	1-780, gnl\|bosTau2\|chr14 (11601760-11602529)
	1-780, gnl\|Hg17\|chr8 (57236561-57235808)