Non-Coding RNA Search

Ss1.1-Pig4-TMW8026C03.5

Sequence:


               
               CGCATCCTCTGCAAGCGTTCGCTGCCTGGGCTCGCCTCGAGGAGACAGAGCTGTGCAGAT
AAAAGCAGCCCCGCTCAGGCTGTCTACACGCGCGCCTGCGGCACGGATCTGGCCTCAAGG
CACCTGCCGGCTCGCGTACTCGGTGTTTACAACCCGTCACCACGCTGAGTCTACGTGCCT
GGCTCCACAGGAAGGAAGAGCATACAGAGCAGCGGGATGCGGGTACCCGTGCTGAGGAAG
CTGGGAGTGCGGAGAAAAGTGGAGGGAACCGGCTCTCGCGGGGCATCCTGCAGCTTTCGG
AACCCAGTTCTCACAAACATGCAGCCAACGCCTCGGAGCCGTTTCCCTTCCACCCTTGCG
GAGGGTTGGGGCATGTCTTTGTCAAAGTTTAATTGCAAAATAAATAAAGGTTAGTAAGCC
TTTTGTGGTTGCTGTTTCAGTAACTTGAGGAGTCAGAGAAAAGTGGAGACCTTACTGACC
AGCTTAAAACTGATAAGAAAGGCTGCTATTGAATATAAATGTAATTATAACAAGTTTAGT
AAAAGAAAAGAAACCTATATAATGCATTTTACATCTTTTTTGCACAAAACAGAAGGTTGT
TTCCTTTTTTTCCTAATCCACTGAACTGTTTGAGCCTTAGAGTTCTGTTGCTCTTTATAA
AAACAAGAAAATAAAGATAAAATTTGCTCAGATATTTGTTTAGTTAAGCCCTACTTGCTG
AACTAGGAAAAAATAGGAAGGCGTGAACTTGCTAAAACGATTAGGCCTAAGAGAGGGTTA
ACCAGAACTCCATTAAGGAGGAGAAAAAAAAGATGGTGAGCCGGCCAGATGGAGAAAGCA
AACAAGAGGCAGAAGTTGAACTCTACCAGATGGAAATAAATATCCTGAGCTTAGCTGGTC
ATCAATATTGCAAAACACACCACTTTGAGGTTTTGTTTTGTTTTGTTTTAATACTGTGCC
AAAGGGTATAGAAATGAAGCAAAAGTAGAATTTGCTATAAAGCAGTAGAAGGAAAAATCT
TATTGTTCACATGAAATATGTAAAACTGGGCTTGAAACAACTTTGAGGTTATTTTTTCAT
TCACACAAAATAATTATGTAGTTATATGTGAAATAAATACTTTAAGAAATAGTATTAAAA
GCATGACTTGTGAAAGTACTTTCATTGGATAAAAGCATCAAAAATAATGGTAATATTTCC
TTCTAGAACTTTTCACATAGAACTGTGCTTATAAATAAACGTGGTGGTAATTATTTCACT
AAGGATGTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCATCCTCTGCAAGCGTTCGCTGCCTGGGCTCGCCTCGAGGAGACAGAGCTGTGCAGAT
AAAAGCAGCCCCGCTCAGGCTGTCTACACGCGCGCCTGCGGCACGGATCTGGCCTCAAGG
CACCTGCCGGCTCGCGTACTCGGTGTTTACAACCCGTCACCACGCTGAGTCTACGTGCCT
GGCTCCACAGGAAGGAAGAGCATACAGAGCAGCGGGATGCGGGTACCCGTGCTGAGGAAG
CTGGGAGTGCGGAGAAAAGTGGAGGGAACCGGCTCTCGCGGGGCATCCTGCAGCTTTCGG
AACCCAGTTCTCACAAACATGCAGCCAACGCCTCGGAGCCGTTTCCCTTCCACCCTTGCG
GAGGGTTGGGGCATGTCTTTGTCAAAGTTTAATTGCAAAATAAATAAAGGTTAGTAAGCC
TTTTGTGGTTGCTGTTTCAGTAACTTGAGGAGTCAGAGAAAAGTGGAGACCTTACTGACC
AGCTTAAAACTGATAAGAAAGGCTGCTATTGAATATAAATGTAATTATAACAAGTTTAGT
AAAAGAAAAGAAACCTATATAATGCATTTTACATCTTTTTTGCACAAAACAGAAGGTTGT
TTCCTTTTTTTCCTAATCCACTGAACTGTTTGAGCCTTAGAGTTCTGTTGCTCTTTATAA
AAACAAGAAAATAAAGATAAAATTTGCTCAGATATTTGTTTAGTTAAGCCCTACTTGCTG
AACTAGGAAAAAATAGGAAGGCGTGAACTTGCTAAAACGATTAGGCCTAAGAGAGGGTTA
ACCAGAACTCCATTAAGGAGGAGAAAAAAAAGATGGTGAGCCGGCCAGATGGAGAAAGCA
AACAAGAGGCAGAAGTTGAACTCTACCAGATGGAAATAAATATCCTGAGCTTAGCTGGTC
ATCAATATTGCAAAACACACCACTTTGAGGTTTTGTTTTGTTTTGTTTTAATACTGTGCC
AAAGGGTATAGAAATGAAGCAAAAGTAGAATTTGCTATAAAGCAGTAGAAGGAAAAATCT
TATTGTTCACATGAAATATGTAAAACTGGGCTTGAAACAACTTTGAGGTTATTTTTTCAT
TCACACAAAATAATTATGTAGTTATATGTGAAATAAATACTTTAAGAAATAGTATTAAAA
GCATGACTTGTGAAAGTACTTTCATTGGATAAAAGCATCAAAAATAATGGTAATATTTCC
TTCTAGAACTTTTCACATAGAACTGTGCTTATAAATAAACGTGGTGGTAATTATTTCACT
AAGGATGTGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               732-831, + strand, RNAz p=0.991186

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               732-831, + strand, RNAz p=0.991186

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-282, gnl|bosTau2|chr5 (14040928-14041205)
               

               
               1-282, gnl|dasNov1|scaffold_3719 (68675-68498)
               

               
               1-282, gnl|echTel1|scaffold_315031 (39933-39782)
               

               
               1-282, gnl|galGal2|chr1 (41210393-41210597)
               

               
               1-282, gnl|hg17|chr12 (91042432-91042607)
               

               
               1-282, gnl|Hg17|chr12 (91042440-91042874)
               

               
               1-282, gnl|loxAfr1|scaffold_11633 (79055-79239)
               

               
               1-282, gnl|mm7|chr10 (96179158-96179027)
               

               
               1-282, gnl|oryCun1|scaffold_209960 (209244-209436)
               

               
               1-282, gnl|panTro1|chr10 (93219460-93219635)
               

               
               1-282, gnl|rheMac2|chr11 (93364959-93365133)
               

               
               1-282, gnl|rn3|chr7 (34048919-34048778)
               


               
               409-686, gnl|bosTau2|chr5 (14041204-14041488)
               

               
               409-686, gnl|Hg17|chr12 (91042873-91043147)
               


               
               732-918, gnl|bosTau2|chr5 (14041571-14041774)
               

               
               732-918, gnl|Hg17|chr12 (91043234-91043434)
               

               
               732-918, gnl|Mm7|chr10 (96178668-96178478)
               


               
               954-1272, gnl|bosTau2|chr5 (14041777-14042121)
               

               
               954-1272, gnl|Mm7|chr10 (96178476-96178110)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr5 (14040928-14041205)
               

               
               1-282, gnl|dasNov1|scaffold_3719 (68675-68498)
               

               
               1-282, gnl|echTel1|scaffold_315031 (39933-39782)
               

               
               1-282, gnl|galGal2|chr1 (41210393-41210597)
               

               
               1-282, gnl|hg17|chr12 (91042432-91042607)
               

               
               1-282, gnl|Hg17|chr12 (91042440-91042874)
               

               
               1-282, gnl|loxAfr1|scaffold_11633 (79055-79239)
               

               
               1-282, gnl|mm7|chr10 (96179158-96179027)
               

               
               1-282, gnl|oryCun1|scaffold_209960 (209244-209436)
               

               
               1-282, gnl|panTro1|chr10 (93219460-93219635)
               

               
               1-282, gnl|rheMac2|chr11 (93364959-93365133)
               

               
               1-282, gnl|rn3|chr7 (34048919-34048778)
               


               
               409-686, gnl|bosTau2|chr5 (14041204-14041488)
               

               
               409-686, gnl|Hg17|chr12 (91042873-91043147)
               


               
               732-918, gnl|bosTau2|chr5 (14041571-14041774)
               

               
               732-918, gnl|Hg17|chr12 (91043234-91043434)
               

               
               732-918, gnl|Mm7|chr10 (96178668-96178478)
               


               
               954-1272, gnl|bosTau2|chr5 (14041777-14042121)
               

               
               954-1272, gnl|Mm7|chr10 (96178476-96178110)

	1-282, gnl\|bosTau2\|chr5 (14040928-14041205)
	1-282, gnl\|dasNov1\|scaffold_3719 (68675-68498)
	1-282, gnl\|echTel1\|scaffold_315031 (39933-39782)
	1-282, gnl\|galGal2\|chr1 (41210393-41210597)
	1-282, gnl\|hg17\|chr12 (91042432-91042607)
	1-282, gnl\|Hg17\|chr12 (91042440-91042874)
	1-282, gnl\|loxAfr1\|scaffold_11633 (79055-79239)
	1-282, gnl\|mm7\|chr10 (96179158-96179027)
	1-282, gnl\|oryCun1\|scaffold_209960 (209244-209436)
	1-282, gnl\|panTro1\|chr10 (93219460-93219635)
	1-282, gnl\|rheMac2\|chr11 (93364959-93365133)
	1-282, gnl\|rn3\|chr7 (34048919-34048778)

	409-686, gnl\|bosTau2\|chr5 (14041204-14041488)
	409-686, gnl\|Hg17\|chr12 (91042873-91043147)

	732-918, gnl\|bosTau2\|chr5 (14041571-14041774)
	732-918, gnl\|Hg17\|chr12 (91043234-91043434)
	732-918, gnl\|Mm7\|chr10 (96178668-96178478)

	954-1272, gnl\|bosTau2\|chr5 (14041777-14042121)
	954-1272, gnl\|Mm7\|chr10 (96178476-96178110)