Non-Coding RNA Search

Ss1.1-Pig4-TMW8026G24.3

Sequence:


               
               AATCCAAAGAAAAATAGCAGATTCTTTTTTGCTTTTGATGATGGAGCAGGGGAGATTAGG
AAAGATTAGGAAAAACCTTTTTTTTCTTCTTCTTCTTCCATCTTGTTCTTCTTGGTGCAT
TGTGAATAAATGGGAAAGAAGAAACTGGGGGCTGGGAAGAGAGTGGGCGTGGCGCTGCCA
GCCCGCTAGGGCTGGGTGACTTTGCAGGGACTGTTGGAAGAGCGGAAGGAAACCGAGGCA
CAGTTAGCTGAGTACCCGAGTCACGTGCTGCGTGTGTGAGAGCAGAAGTGCCTGGCGTGC
TTGCAAGGACTGCGTGTTCTGGCACCGCGTTCTCCTGCCAGAGTCAGAGGTCTATGCCCC
ACGCCTTAGCGCCCTCTCTCGGCGAGTTATAGCAGTCTCATAGAACATTCACACCCCTCC
CCTTGAGCTGCTTGGTTTCCCTGTACTCAGGAGGGGTGAGCCTGGGAGTGAAAAACATAA
GTCGTGGGTTTATTTTATACTGGCCTCATGTTCTTCTTGTCCATAAAATTTTTAGAAACA
GCTGCGGCATGTGATGTTGACTTGGCATTAAAGTTCCTCAATTACAAAGCTGTGAAGTTG
GGCAGCCTCTCTCTCTTTTATTTTACTTTTTTAAAGGACATGATTTTATTTGACAGACTT
GGAAATGCAAATAAGGAAACTTCTGATATAAATTGATAGAGTTGGAATCATTAGCAAATG
AAGGGCTACGTGCAAGAAAGAACTGCTTCTTGCTTATTTGCCACATAGCATCCATCTAGG
CAGGCCTCTGAATATTATCCAGGGAGTCAGTAGCATCACAGGGCTTTGTGAGTACAGTGT
CCAAGAGCTACACTGGTGAAAATATTCCTGAGGTCGCCCCCACCTTTGTGTCACCCTCCC
TGTATCAGTAGATTTATTTCATAAGAGAATGCATGAAGATTGCTTTGTTTTAGAGTAGAG
AGGAGAATTATAATTGCTCATTTTAAAAGGCGATTTATGGATTTAGAGCAACACTATTGA
AAAGAATTTTCTGGGTTGATAGAAATGTTTCATATTTATATTTACATTGTGTTGTCCTAT
TGGGTAACTGCTGAGCACTTGAAATATGGCTGGTATGGCTAAAGAACAGAATTTTAAATT
TTACTTAGTTTAAATACCCACATGTAGCTAGTGGCCACCATACTGAACAGCACAAACAGC
ACAGGTNTGAAGAATGAGTGGGAAAGTGGTTATTTACATAAATATTTTCAAAACATTCTT
TTCTTCCCAATGGCCTAGTGGTTCTCATATAGGAAATAAGCCTGAAAAGCCACAAGAATC
CTTGCCCAAGAATGGCTTGCAACCATTTAAGTTTCACTCACCCCTTACATGTTGAATCGG
AACTAAAATTGCTTTTTAGCCAATAAACATGGAGGTGGTGGACTTTAGTACTGAAGCCAG
TCTGAAGTCTATCTGATGGGTTCAGTCATGTTATTAAGTCCCTTGCATGGACATGTTCTT
GTTATCCCTGATGGTGGCCCGTGGAAGACATCTTGCTATTTAACATGAAATATGGGAGTA
AAGAGAGTAGAGATTCCTGCATTGAGCCCAAAGATATTTGGCTTCCAGTTGCATCGCTTG
ACATCTGGTGGACGTAGTTTTCATATTGCTGGTAAATTCTCCAGCTGGTGGTAGTGATGG
GCCAACAGATACAGCTGCTCTCTTGCCTCACTTGTAAATTATGTTTTTGACCTTCCTTAG
AGAGAGTTAATCCCTCTCCCTTTCTTCCTTCTTTGAGCCTGTGGCTATAAATGCCTTCCC
TCCAAAACCAAGAAACCAACCAAACACAAAAATCCCGCAACACTAAAGCCTTGGTTGCTG
AATTCTGTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCAAAGAAAAATAGCAGATTCTTTTTTGCTTTTGATGATGGAGCAGGGGAGATTAGG
AAAGATTAGGAAAAACCTTTTTTTTCTTCTTCTTCTTCCATCTTGTTCTTCTTGGTGCAT
TGTGAATAAATGGGAAAGAAGAAACTGGGGGCTGGGAAGAGAGTGGGCGTGGCGCTGCCA
GCCCGCTAGGGCTGGGTGACTTTGCAGGGACTGTTGGAAGAGCGGAAGGAAACCGAGGCA
CAGTTAGCTGAGTACCCGAGTCACGTGCTGCGTGTGTGAGAGCAGAAGTGCCTGGCGTGC
TTGCAAGGACTGCGTGTTCTGGCACCGCGTTCTCCTGCCAGAGTCAGAGGTCTATGCCCC
ACGCCTTAGCGCCCTCTCTCGGCGAGTTATAGCAGTCTCATAGAACATTCACACCCCTCC
CCTTGAGCTGCTTGGTTTCCCTGTACTCAGGAGGGGTGAGCCTGGGAGTGAAAAACATAA
GTCGTGGGTTTATTTTATACTGGCCTCATGTTCTTCTTGTCCATAAAATTTTTAGAAACA
GCTGCGGCATGTGATGTTGACTTGGCATTAAAGTTCCTCAATTACAAAGCTGTGAAGTTG
GGCAGCCTCTCTCTCTTTTATTTTACTTTTTTAAAGGACATGATTTTATTTGACAGACTT
GGAAATGCAAATAAGGAAACTTCTGATATAAATTGATAGAGTTGGAATCATTAGCAAATG
AAGGGCTACGTGCAAGAAAGAACTGCTTCTTGCTTATTTGCCACATAGCATCCATCTAGG
CAGGCCTCTGAATATTATCCAGGGAGTCAGTAGCATCACAGGGCTTTGTGAGTACAGTGT
CCAAGAGCTACACTGGTGAAAATATTCCTGAGGTCGCCCCCACCTTTGTGTCACCCTCCC
TGTATCAGTAGATTTATTTCATAAGAGAATGCATGAAGATTGCTTTGTTTTAGAGTAGAG
AGGAGAATTATAATTGCTCATTTTAAAAGGCGATTTATGGATTTAGAGCAACACTATTGA
AAAGAATTTTCTGGGTTGATAGAAATGTTTCATATTTATATTTACATTGTGTTGTCCTAT
TGGGTAACTGCTGAGCACTTGAAATATGGCTGGTATGGCTAAAGAACAGAATTTTAAATT
TTACTTAGTTTAAATACCCACATGTAGCTAGTGGCCACCATACTGAACAGCACAAACAGC
ACAGGTNTGAAGAATGAGTGGGAAAGTGGTTATTTACATAAATATTTTCAAAACATTCTT
TTCTTCCCAATGGCCTAGTGGTTCTCATATAGGAAATAAGCCTGAAAAGCCACAAGAATC
CTTGCCCAAGAATGGCTTGCAACCATTTAAGTTTCACTCACCCCTTACATGTTGAATCGG
AACTAAAATTGCTTTTTAGCCAATAAACATGGAGGTGGTGGACTTTAGTACTGAAGCCAG
TCTGAAGTCTATCTGATGGGTTCAGTCATGTTATTAAGTCCCTTGCATGGACATGTTCTT
GTTATCCCTGATGGTGGCCCGTGGAAGACATCTTGCTATTTAACATGAAATATGGGAGTA
AAGAGAGTAGAGATTCCTGCATTGAGCCCAAAGATATTTGGCTTCCAGTTGCATCGCTTG
ACATCTGGTGGACGTAGTTTTCATATTGCTGGTAAATTCTCCAGCTGGTGGTAGTGATGG
GCCAACAGATACAGCTGCTCTCTTGCCTCACTTGTAAATTATGTTTTTGACCTTCCTTAG
AGAGAGTTAATCCCTCTCCCTTTCTTCCTTCTTTGAGCCTGTGGCTATAAATGCCTTCCC
TCCAAAACCAAGAAACCAACCAAACACAAAAATCCCGCAACACTAAAGCCTTGGTTGCTG
AATTCTGTTGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               4-197, + strand, RNAz p=0.997034
               

               
               399-517, - strand, RNAz p=0.885616

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-197, + strand, RNAz p=0.997034
               

               
               399-517, - strand, RNAz p=0.885616

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               4-893, gnl|bosTau2|chr13 (3094528-3095380)
               

               
               4-893, gnl|Hg17|chr20 (13345933-13345085)
               


               
               909-1190, gnl|bosTau2|chr13 (3095702-3095984)
               

               
               909-1190, gnl|Hg17|chr20 (13344983-13344690)
               

               
               909-1190, gnl|Mm7|chr2 (139597392-139597128)
               


               
               1195-1872, gnl|bosTau2|chr13 (3096044-3096729)
               

               
               1195-1872, gnl|Hg17|chr20 (13344680-13344041)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-893, gnl|bosTau2|chr13 (3094528-3095380)
               

               
               4-893, gnl|Hg17|chr20 (13345933-13345085)
               


               
               909-1190, gnl|bosTau2|chr13 (3095702-3095984)
               

               
               909-1190, gnl|Hg17|chr20 (13344983-13344690)
               

               
               909-1190, gnl|Mm7|chr2 (139597392-139597128)
               


               
               1195-1872, gnl|bosTau2|chr13 (3096044-3096729)
               

               
               1195-1872, gnl|Hg17|chr20 (13344680-13344041)

	4-197, + strand, RNAz p=0.997034
	399-517, - strand, RNAz p=0.885616

	4-893, gnl\|bosTau2\|chr13 (3094528-3095380)
	4-893, gnl\|Hg17\|chr20 (13345933-13345085)

	909-1190, gnl\|bosTau2\|chr13 (3095702-3095984)
	909-1190, gnl\|Hg17\|chr20 (13344983-13344690)
	909-1190, gnl\|Mm7\|chr2 (139597392-139597128)

	1195-1872, gnl\|bosTau2\|chr13 (3096044-3096729)
	1195-1872, gnl\|Hg17\|chr20 (13344680-13344041)