Non-Coding RNA Search

Ss1.1-Pig4-TMW8026H22.3

Sequence:


               
               GCAGCTCTCTGCTGCCGCCCCTGCCCAGAGCTGGCAGACACCCTCTGTTGCCTTTCCTCC
CTCAGAGCAAAGAGGTCCCAGGGAGCCAGGGCCAAGTGGACCCTAGGATAGAGAGCCACT
TGACCCCAAAGCAGGCATCCCTTTCCCAAACCAGCTTTTCTGCAGCCAACTGCCTCCGGG
CACTGTGGCAGACCACCCTCAGGAGGCGGGGGAGGGGGCTCCAGACTGGATGCCTCCCAC
GCCTCAGATCCGACACTGAGCTATGGGCCCTGGATCCAGAAAGTCTGAAGGGTAGGGTGC
CCACACCCTACAGGCTTCCAGCGCCCCACCTCCCAGCCACACCACCTCTGCCTTCCATCT
GACCGATCCCCAGGCCTCCGGTCGGGGCCAGGATGCGGAGACCCACCCTTAGCACAGCAC
AAGCTCCAGTGCCCAACGCCTCCCCCATCCCAGCGTCCACATGTCCAGCCCCCACCTGCT
CAGTTCTACTCCCAGACATTTAAATTTGTGTAAATATTTATTTTTGTGTGTGAACAATAC
TACAAAGTAATCAGTAGATCTTTTGCAAAATGTTACCCCAGGCAATTTGTGAAAATCTTA
ATGTTGGAAACTGGCAGAGACAATCGCCGCCTTAGAATCCTTGACGTCAAGTTGTTTCAC
ATGTCATTTCTCCTCCCAGAGGCAGTACCCAAGCCAGACAAACGGTTTGCTTTTCTGAAC
AGACAGGAGTGAGCAAGACTGGGGAAGGGGCTCGCGCCACCACCCACACGAGGAATTAAG
AGCTGAAGATTAGTATAAGCTACAGTTTGAAGTTGTGTTTTTCTGAGTCACGCTTGTCCT
TACTGCCCAACTTCAGCAGCCTCAGCACCGTGGTGAGAGTGTAGGTTCAATGTGCTTCAA
AGAGAAAAGAAACAATGCTAGCAGTCAGGGTGCACTGGGCCCCCCAGAGCCCCTCCAGGA
CAGTGGATCCTGTCTCACCCATCCCGCTTCTTGGGTGGGCTCCTTCCTACTGAAGCTACA
CATGAAGCCCTTGCGATGGCAGAATCAGGAGCAAGTTACTGTGTGTGGAAACAGGATTCC
ATTCGCTAGTTCTGTCAGGGAACTCGTTCAGTTTTGCTTTTGTTTTAAAAGATGCAGCGT
CAACCCTGGAGGGCACCACTGAGCTGGTTCTGCTGAAAGGCGCTTGCTGCTGTCCGCCCT
CCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTCTCTGCTGCCGCCCCTGCCCAGAGCTGGCAGACACCCTCTGTTGCCTTTCCTCC
CTCAGAGCAAAGAGGTCCCAGGGAGCCAGGGCCAAGTGGACCCTAGGATAGAGAGCCACT
TGACCCCAAAGCAGGCATCCCTTTCCCAAACCAGCTTTTCTGCAGCCAACTGCCTCCGGG
CACTGTGGCAGACCACCCTCAGGAGGCGGGGGAGGGGGCTCCAGACTGGATGCCTCCCAC
GCCTCAGATCCGACACTGAGCTATGGGCCCTGGATCCAGAAAGTCTGAAGGGTAGGGTGC
CCACACCCTACAGGCTTCCAGCGCCCCACCTCCCAGCCACACCACCTCTGCCTTCCATCT
GACCGATCCCCAGGCCTCCGGTCGGGGCCAGGATGCGGAGACCCACCCTTAGCACAGCAC
AAGCTCCAGTGCCCAACGCCTCCCCCATCCCAGCGTCCACATGTCCAGCCCCCACCTGCT
CAGTTCTACTCCCAGACATTTAAATTTGTGTAAATATTTATTTTTGTGTGTGAACAATAC
TACAAAGTAATCAGTAGATCTTTTGCAAAATGTTACCCCAGGCAATTTGTGAAAATCTTA
ATGTTGGAAACTGGCAGAGACAATCGCCGCCTTAGAATCCTTGACGTCAAGTTGTTTCAC
ATGTCATTTCTCCTCCCAGAGGCAGTACCCAAGCCAGACAAACGGTTTGCTTTTCTGAAC
AGACAGGAGTGAGCAAGACTGGGGAAGGGGCTCGCGCCACCACCCACACGAGGAATTAAG
AGCTGAAGATTAGTATAAGCTACAGTTTGAAGTTGTGTTTTTCTGAGTCACGCTTGTCCT
TACTGCCCAACTTCAGCAGCCTCAGCACCGTGGTGAGAGTGTAGGTTCAATGTGCTTCAA
AGAGAAAAGAAACAATGCTAGCAGTCAGGGTGCACTGGGCCCCCCAGAGCCCCTCCAGGA
CAGTGGATCCTGTCTCACCCATCCCGCTTCTTGGGTGGGCTCCTTCCTACTGAAGCTACA
CATGAAGCCCTTGCGATGGCAGAATCAGGAGCAAGTTACTGTGTGTGGAAACAGGATTCC
ATTCGCTAGTTCTGTCAGGGAACTCGTTCAGTTTTGCTTTTGTTTTAAAAGATGCAGCGT
CAACCCTGGAGGGCACCACTGAGCTGGTTCTGCTGAAAGGCGCTTGCTGCTGTCCGCCCT
CCCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               150-325, - strand, RNAz p=0.998296

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-325, - strand, RNAz p=0.998296

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               67-189, - strand, RNAmicro p=0.999177
               

               
               247-328, - strand, RNAmicro p=0.991481

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               67-189, - strand, RNAmicro p=0.999177
               

               
               247-328, - strand, RNAmicro p=0.991481

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-325, gnl|bosTau2|chr13 (42750235-42750562)
               

               
               1-325, gnl|Hg17|chr20 (30497580-30497253)
               

               
               1-325, gnl|Mm7|chr2 (153151129-153150833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr13 (42750235-42750562)
               

               
               1-325, gnl|Hg17|chr20 (30497580-30497253)
               

               
               1-325, gnl|Mm7|chr2 (153151129-153150833)

	67-189, - strand, RNAmicro p=0.999177
	247-328, - strand, RNAmicro p=0.991481

	1-325, gnl\|bosTau2\|chr13 (42750235-42750562)
	1-325, gnl\|Hg17\|chr20 (30497580-30497253)
	1-325, gnl\|Mm7\|chr2 (153151129-153150833)