Non-Coding RNA Search

Ss1.1-Pig4-TMW8026J09.5

Sequence:


               
               GAAAGAGAAACCTGTCCATTTTGGCATCTTAAGCTATCCTGTGGCAAAGGTAATAAGGCC
CTAATCTTACAACCTTAAAAACACAATTCTCAAGAGTTTGTAAGAAGCCAGGGCCTTGGA
GCCTCCCACTTTGTCTCTCCTTTGAAGTGGATGGGAACTCAGGGAGTGAAGATCCTGTTT
TGGAAGAAAGCCCCAGGCCATTTCAGCCCCCTGTGTTCTTATGATTTTCTCTCAGGAAAC
ACACACTTTAAATGGCAGATTTTTAATTTGGCCCCAGGTGATTTATACTAAAAATAGTTC
AAAATATTCACCTAAGAACAGAATCTCAGCCTTATAGTTTTAGGAAAACATGAAAATTTC
AGAATGCTATTAATAGCATGTTAATATCTTAAAGAAAACGTGCACCTTTTAGGGGAGAAA
TGTTTGGTGTGACTCCAGAATGTGATATTATCCATCCTGATGAGAAAAAATTTAAATGTT
GGTAAATCTTTTAAATCTTAAATTATATATATAAATTGAGTTTTTAACTATTACTGCTTT
TCTTAAAAAGTCAATAATGGCAACATTCATTCCTTAATGGAAATTAAATCATGTAAGCTT
CCTAATATCATAATCATACTGAAATTCTTCTCTCCGAAGAATTGCTTCTGTTTTTTTAAA
GTGACAAATTTACTATTTTTATGATAAGCACATGAGAGTCTCTCATATTTTCCAAAAACA
GCCTATGTTGCATTGCTGGGTCTAGGAAAGAATAATACCGAAAGTTAATAAGCCGCTATA
ATTACTTAATTATGTTACTACAGAAACTATAGAATATTTACCTTGGGACGAAAATATTGA
AATATTAGAAATTCTTAGGTATTGACAGAATCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGAAACCTGTCCATTTTGGCATCTTAAGCTATCCTGTGGCAAAGGTAATAAGGCC
CTAATCTTACAACCTTAAAAACACAATTCTCAAGAGTTTGTAAGAAGCCAGGGCCTTGGA
GCCTCCCACTTTGTCTCTCCTTTGAAGTGGATGGGAACTCAGGGAGTGAAGATCCTGTTT
TGGAAGAAAGCCCCAGGCCATTTCAGCCCCCTGTGTTCTTATGATTTTCTCTCAGGAAAC
ACACACTTTAAATGGCAGATTTTTAATTTGGCCCCAGGTGATTTATACTAAAAATAGTTC
AAAATATTCACCTAAGAACAGAATCTCAGCCTTATAGTTTTAGGAAAACATGAAAATTTC
AGAATGCTATTAATAGCATGTTAATATCTTAAAGAAAACGTGCACCTTTTAGGGGAGAAA
TGTTTGGTGTGACTCCAGAATGTGATATTATCCATCCTGATGAGAAAAAATTTAAATGTT
GGTAAATCTTTTAAATCTTAAATTATATATATAAATTGAGTTTTTAACTATTACTGCTTT
TCTTAAAAAGTCAATAATGGCAACATTCATTCCTTAATGGAAATTAAATCATGTAAGCTT
CCTAATATCATAATCATACTGAAATTCTTCTCTCCGAAGAATTGCTTCTGTTTTTTTAAA
GTGACAAATTTACTATTTTTATGATAAGCACATGAGAGTCTCTCATATTTTCCAAAAACA
GCCTATGTTGCATTGCTGGGTCTAGGAAAGAATAATACCGAAAGTTAATAAGCCGCTATA
ATTACTTAATTATGTTACTACAGAAACTATAGAATATTTACCTTGGGACGAAAATATTGA
AATATTAGAAATTCTTAGGTATTGACAGAATCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               87-205, - strand, RNAz p=0.57816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-205, - strand, RNAz p=0.57816

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-802, gnl|bosTau2|chr4 (4261298-4260508)
               

               
               14-802, gnl|Hg17|chr7 (91886059-91885273)
               

               
               14-802, gnl|Mm7|chr5 (3530198-3531124)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-802, gnl|bosTau2|chr4 (4261298-4260508)
               

               
               14-802, gnl|Hg17|chr7 (91886059-91885273)
               

               
               14-802, gnl|Mm7|chr5 (3530198-3531124)

	14-802, gnl\|bosTau2\|chr4 (4261298-4260508)
	14-802, gnl\|Hg17\|chr7 (91886059-91885273)
	14-802, gnl\|Mm7\|chr5 (3530198-3531124)