Non-Coding RNA Search

Ss1.1-Pig4-TMW8026L17.5

Sequence:


               
               GCGGCCGCTCCAACATCAGAAGGAGGATGGAGAGACTATGGAGTTGATCCATCTCAGTTC
TCAGGGACTTTAATGCGGACATGTGAACGGTTAGTAAAAGAAGGACGGTTTGTCCCAAGT
AACCCCATTGGAATCCTCACCACAAGCTACTGTGAGTTGCTGCAAAACAAAGTACCTTTG
CTTGGTAGCAGTACTGCCTGTATCGTGGTGCTGGACAGAACTAGCCACCGCTTACACACA
GCAAACCTGGGTGACTCTGGCTTTCTGGTTGTCAGGGGTGGTGAAGTTGTGCACCGATCA
GATGAGCAGCAGCATTACTTCAACACTCCATTCCAGCTCTCAATCGCACCCCCGGAAGCC
GAGGGAGTTGTCTTGAGTGACAGCCCGGATGCTGCTGATAGCACATCTTTTGATGTCCAG
TTAGGAGACATTATCCTGACGGCAACAGATGGACTCTTTGACAACATGCCTGATTACATG
ATCCTTCAGGAGCTAAAAAAGTTAAAGAATTCAAATTATGAGAGTATACAACAGACAGCA
AGAAGCATTGCTGAGCAAGCTCATGAGCTGGCCTATGACCCAAATTATATGTCACCTTTT
GCACAGTTTGCATGTGACAACGGATTGAATGTGAGAGGCGGAAAGCCAGATGACATCACC
GTCCTTCTCTCAATAGTGGCTGAATATACAGACTGACTCTCCTAGGTGTCAACTCCTTCC
TTTCCTTTTATCATCCCAAATTGCCCCCTGCCATGTGTGCTGATCCTGCTGGCAGGACCA
CGTTTCTTTGCCACTGATCTCAATGGCCAGTGATGTAAGCCTTTTGCCTGAGACCCCATT
GAGATCTTTGTTGAGAACCACTACTATCATTCACTAGCTCATATCTGCCAGCAACATTTA
AAGAGAATCAAGATTTGAAGATTGGCCTTCACTTCTTACTGTCCTTTCCATGATAGGATT
GAGGTTTCCAAAGCCAGAATGGCTATTACTTTTCAAAAACGGTTGAAATACTGAAAATGA
GTAATATTGGTAAAGTGAATTCAAAATTACAGTGTGTAAAAGGGATTTTAAAAGTCTAAC
ACAAATTGTAGGTTATGGTACATGTACTAGAAACTTATGTTATTCATCAAAAGATATGTT
ACACGTGTACTCTACAGTCTGTGTTATGATTGGGTGTGGCTTTATGTTTTTATTTTAAAC
TCCTGTTTTTCAGGGGCTTATAATCTTGCTCTAAAACACTGTTCTGGATTACAAAATCTT
GATCCCAGGAGCTTTTTCTGTTTCAAGTTGGAAGAAAAATTCAGTTTAGTTCTATGGATG
CACATGTTTCATGGTTTTTAAAAGATGTTTAATTATGCTCCTGTGATGAAAGTTTCAGCA
GTTTATTGATTAGTGCATATCAGGTTGGTGGCCTGATCTGCAGGGGAGGGGGGTTGGGGA
GACTCCTTACCAGAATTTTTTAATGGAAATATTTAA------------------------
------------------------------------------------------------
TTCCACATCAAGCTGATGCACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCCAACATCAGAAGGAGGATGGAGAGACTATGGAGTTGATCCATCTCAGTTC
TCAGGGACTTTAATGCGGACATGTGAACGGTTAGTAAAAGAAGGACGGTTTGTCCCAAGT
AACCCCATTGGAATCCTCACCACAAGCTACTGTGAGTTGCTGCAAAACAAAGTACCTTTG
CTTGGTAGCAGTACTGCCTGTATCGTGGTGCTGGACAGAACTAGCCACCGCTTACACACA
GCAAACCTGGGTGACTCTGGCTTTCTGGTTGTCAGGGGTGGTGAAGTTGTGCACCGATCA
GATGAGCAGCAGCATTACTTCAACACTCCATTCCAGCTCTCAATCGCACCCCCGGAAGCC
GAGGGAGTTGTCTTGAGTGACAGCCCGGATGCTGCTGATAGCACATCTTTTGATGTCCAG
TTAGGAGACATTATCCTGACGGCAACAGATGGACTCTTTGACAACATGCCTGATTACATG
ATCCTTCAGGAGCTAAAAAAGTTAAAGAATTCAAATTATGAGAGTATACAACAGACAGCA
AGAAGCATTGCTGAGCAAGCTCATGAGCTGGCCTATGACCCAAATTATATGTCACCTTTT
GCACAGTTTGCATGTGACAACGGATTGAATGTGAGAGGCGGAAAGCCAGATGACATCACC
GTCCTTCTCTCAATAGTGGCTGAATATACAGACTGACTCTCCTAGGTGTCAACTCCTTCC
TTTCCTTTTATCATCCCAAATTGCCCCCTGCCATGTGTGCTGATCCTGCTGGCAGGACCA
CGTTTCTTTGCCACTGATCTCAATGGCCAGTGATGTAAGCCTTTTGCCTGAGACCCCATT
GAGATCTTTGTTGAGAACCACTACTATCATTCACTAGCTCATATCTGCCAGCAACATTTA
AAGAGAATCAAGATTTGAAGATTGGCCTTCACTTCTTACTGTCCTTTCCATGATAGGATT
GAGGTTTCCAAAGCCAGAATGGCTATTACTTTTCAAAAACGGTTGAAATACTGAAAATGA
GTAATATTGGTAAAGTGAATTCAAAATTACAGTGTGTAAAAGGGATTTTAAAAGTCTAAC
ACAAATTGTAGGTTATGGTACATGTACTAGAAACTTATGTTATTCATCAAAAGATATGTT
ACACGTGTACTCTACAGTCTGTGTTATGATTGGGTGTGGCTTTATGTTTTTATTTTAAAC
TCCTGTTTTTCAGGGGCTTATAATCTTGCTCTAAAACACTGTTCTGGATTACAAAATCTT
GATCCCAGGAGCTTTTTCTGTTTCAAGTTGGAAGAAAAATTCAGTTTAGTTCTATGGATG
CACATGTTTCATGGTTTTTAAAAGATGTTTAATTATGCTCCTGTGATGAAAGTTTCAGCA
GTTTATTGATTAGTGCATATCAGGTTGGTGGCCTGATCTGCAGGGGAGGGGGGTTGGGGA
GACTCCTTACCAGAATTTTTTAATGGAAATATTTAA------------------------
------------------------------------------------------------
TTCCACATCAAGCTGATGCACACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818395|ref|XP_603708.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818395|ref|XP_603708.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               178-383, - strand, RNAz p=0.634442
               

               
               715-865, - strand, RNAz p=0.994869
               

               
               1360-1473, + strand, RNAz p=0.984897

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-383, - strand, RNAz p=0.634442
               

               
               715-865, - strand, RNAz p=0.994869
               

               
               1360-1473, + strand, RNAz p=0.984897

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139283, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139283, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               178-383, gnl|bosTau2|chr17 (30188525-30188730)
               

               
               178-383, gnl|Hg17|chr12 (109446610-109446405)
               

               
               178-383, gnl|Mm7|chr5 (121547850-121548055)
               


               
               636-1473, gnl|bosTau2|chr17 (30194896-30195714)
               

               
               636-1473, gnl|Hg17|chr12 (109437622-109436783)
               

               
               636-1473, gnl|Mm7|chr5 (121555076-121555866)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-383, gnl|bosTau2|chr17 (30188525-30188730)
               

               
               178-383, gnl|Hg17|chr12 (109446610-109446405)
               

               
               178-383, gnl|Mm7|chr5 (121547850-121548055)
               


               
               636-1473, gnl|bosTau2|chr17 (30194896-30195714)
               

               
               636-1473, gnl|Hg17|chr12 (109437622-109436783)
               

               
               636-1473, gnl|Mm7|chr5 (121555076-121555866)

	178-383, - strand, RNAz p=0.634442
	715-865, - strand, RNAz p=0.994869
	1360-1473, + strand, RNAz p=0.984897

	178-383, gnl\|bosTau2\|chr17 (30188525-30188730)
	178-383, gnl\|Hg17\|chr12 (109446610-109446405)
	178-383, gnl\|Mm7\|chr5 (121547850-121548055)

	636-1473, gnl\|bosTau2\|chr17 (30194896-30195714)
	636-1473, gnl\|Hg17\|chr12 (109437622-109436783)
	636-1473, gnl\|Mm7\|chr5 (121555076-121555866)