Ss1.1-Pig4-TMW8026O14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATCTACCCCCAGGTTTCCAACTCCAAGGACTCCAAGGACTCCAAGGACTCCTCGTGGA GCTGGTGGACCTGCTAGTGCTCAAGGTTCAGTCAAATATGAAAATTCAGATTTATATTCA CCAGCTTCCACCCCATCCACTTGCAGACCCCTTAATTCTGTTGAACCTGCAACTGTTCCT TCCATCCCTGAAGCACACAGTCTTTATGTAAACCTCATTCTTTCAGAATCAGTTATGAAT TTGTTTAAAGACTGTAACTTTGATAGTTGCTGTATATGTGTCTGCAACATGAATATCAAG GGTGCCGATGTTGGAGTTTACATTCCGGATCCAACGCAGGAAGCACAGTATAGGTGTACC TGTGGCTTCAGTGCTGTCATGAACAGAAAATTTGGAAACAATTCAGGATTGTTTCTTGAA GATGAACTAGATATCATAGGACGCAACACAGAATGTGGCAAAGAAGCAGAAAAACGTTTT GAAGCTCTCAGGGCTACTTCTGCAGAACATGTTAATGGAGGACTAAAGGAATCTGAAAAA TTGCCTGATGAGTTGATATTATTGCTACAAGATCAGTGCACTAATTTATTTTCACCCTTT GGAGCTGCAGACCAAGATCCTTTCCCCAAAATTGGTGTTATTAACAATTGGGTACGTGTT GAAGAGCGGGACTGTTGCAATGACTGCTACCTTGCATTAGAGCATGGACGTCAGTTCATG GATAACATGTCAGGAGGAAAAGTTGATGAAGCACTTGTGAAAAGTTCTTGCTTACATCCC TGGTCCAAAAGAAATGATGTTAGTATGCAGTGCTCACAAGATATACTTCGAATGCTCCTA TCTCTTCAGCCAGTTCTTCAGGATGCTATTCAGAAAAAAAGAACAGTAAGGCCTTGGGGA GTTCAGGGTCCTCTCACTTGGCAACAATTTCATAAAATGGCTGGCCGAGGCTCTTATGGA ACTGATGAATCCCCAGAACCACTGCCAATCCCCACATTTTTGTTGGGTTATGATTTTGAT TTTCTGGTGCTTTCTCCATTTGCTCTCCCTCATTGGGAGAGACTTATGCTGGAACCCTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATCTACCCCCAGGTTTCCAACTCCAAGGACTCCAAGGACTCCAAGGACTCCTCGTGGA GCTGGTGGACCTGCTAGTGCTCAAGGTTCAGTCAAATATGAAAATTCAGATTTATATTCA CCAGCTTCCACCCCATCCACTTGCAGACCCCTTAATTCTGTTGAACCTGCAACTGTTCCT TCCATCCCTGAAGCACACAGTCTTTATGTAAACCTCATTCTTTCAGAATCAGTTATGAAT TTGTTTAAAGACTGTAACTTTGATAGTTGCTGTATATGTGTCTGCAACATGAATATCAAG GGTGCCGATGTTGGAGTTTACATTCCGGATCCAACGCAGGAAGCACAGTATAGGTGTACC TGTGGCTTCAGTGCTGTCATGAACAGAAAATTTGGAAACAATTCAGGATTGTTTCTTGAA GATGAACTAGATATCATAGGACGCAACACAGAATGTGGCAAAGAAGCAGAAAAACGTTTT GAAGCTCTCAGGGCTACTTCTGCAGAACATGTTAATGGAGGACTAAAGGAATCTGAAAAA TTGCCTGATGAGTTGATATTATTGCTACAAGATCAGTGCACTAATTTATTTTCACCCTTT GGAGCTGCAGACCAAGATCCTTTCCCCAAAATTGGTGTTATTAACAATTGGGTACGTGTT GAAGAGCGGGACTGTTGCAATGACTGCTACCTTGCATTAGAGCATGGACGTCAGTTCATG GATAACATGTCAGGAGGAAAAGTTGATGAAGCACTTGTGAAAAGTTCTTGCTTACATCCC TGGTCCAAAAGAAATGATGTTAGTATGCAGTGCTCACAAGATATACTTCGAATGCTCCTA TCTCTTCAGCCAGTTCTTCAGGATGCTATTCAGAAAAAAAGAACAGTAAGGCCTTGGGGA GTTCAGGGTCCTCTCACTTGGCAACAATTTCATAAAATGGCTGGCCGAGGCTCTTATGGA ACTGATGAATCCCCAGAACCACTGCCAATCCCCACATTTTTGTTGGGTTATGATTTTGAT TTTCTGGTGCTTTCTCCATTTGCTCTCCCTCATTGGGAGAGACTTATGCTGGAACCCTAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-279, - strand, RNAz p=0.959134 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-279, - strand, RNAz p=0.959134 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-808, gnl|bosTau2|chr19 (5421797-5422602) | |
| 1-808, gnl|Hg17|chr17 (57415136-57414330) | |
| 1-808, gnl|Mm7|chr11 (86368983-86368178) | |
| 19-434, gnl|bosTau2|chr17 (33604278-33603866) | |
| 19-434, gnl|canFam2|chr26 (15825439-15825982) | |
| 19-434, gnl|danRer3|chr10 (27291676-27291142) | |
| 19-434, gnl|dasNov1|scaffold_205 (31738-32281) | |
| 19-434, gnl|echTel1|scaffold_279287 (58280-58823) | |
| 19-434, gnl|fr1|chrUn (160459853-160459310) | |
| 19-434, gnl|galGal2|chr15 (11510622-11510079) | |
| 19-434, gnl|hg17|chr12 (114891865-114892408) | |
| 19-434, gnl|Hg17|chr12 (114892334-114891922) | |
| 19-434, gnl|loxAfr1|scaffold_1732 (17189-17732) | |
| 19-434, gnl|mm7|chr5 (117971436-117970893) | |
| 19-434, gnl|Mm7|chr5 (117970965-117971377) | |
| 19-434, gnl|monDom2|scaffold_115 (3134979-3135522) | |
| 19-434, gnl|oryCun1|scaffold_196512 (7185-7728) | |
| 19-434, gnl|panTro1|chr10 (117787207-117787750) | |
| 19-434, gnl|rheMac2|chr11 (116928070-116928613) | |
| 19-434, gnl|rn3|chr12 (39021415-39021958) | |
| 19-434, gnl|tetNig1|chr4 (2472562-2473099) | |
| 19-434, gnl|xenTro1|scaffold_878 (428064-428599) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-808, gnl|bosTau2|chr19 (5421797-5422602) | |
| 1-808, gnl|Hg17|chr17 (57415136-57414330) | |
| 1-808, gnl|Mm7|chr11 (86368983-86368178) | |
| 19-434, gnl|bosTau2|chr17 (33604278-33603866) | |
| 19-434, gnl|canFam2|chr26 (15825439-15825982) | |
| 19-434, gnl|danRer3|chr10 (27291676-27291142) | |
| 19-434, gnl|dasNov1|scaffold_205 (31738-32281) | |
| 19-434, gnl|echTel1|scaffold_279287 (58280-58823) | |
| 19-434, gnl|fr1|chrUn (160459853-160459310) | |
| 19-434, gnl|galGal2|chr15 (11510622-11510079) | |
| 19-434, gnl|hg17|chr12 (114891865-114892408) | |
| 19-434, gnl|Hg17|chr12 (114892334-114891922) | |
| 19-434, gnl|loxAfr1|scaffold_1732 (17189-17732) | |
| 19-434, gnl|mm7|chr5 (117971436-117970893) | |
| 19-434, gnl|Mm7|chr5 (117970965-117971377) | |
| 19-434, gnl|monDom2|scaffold_115 (3134979-3135522) | |
| 19-434, gnl|oryCun1|scaffold_196512 (7185-7728) | |
| 19-434, gnl|panTro1|chr10 (117787207-117787750) | |
| 19-434, gnl|rheMac2|chr11 (116928070-116928613) | |
| 19-434, gnl|rn3|chr12 (39021415-39021958) | |
| 19-434, gnl|tetNig1|chr4 (2472562-2473099) | |
| 19-434, gnl|xenTro1|scaffold_878 (428064-428599) |