Non-Coding RNA Search

Ss1.1-Pig4-TMW8026P22.5

Sequence:


               
               ATGAGGTTGTGAGTCTACAGCGAGAGTCTGAGAAGGAGGAACCAGTCACTCCTACTAGTG
GAGGAGGTCCATTGTCACCCCAGGGGGATGAAGCAGAAGAGGAGAGTGATAATGAACTTT
CAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTATATTCTTGGGGAG
AATTGCTAGGAAGATGGCACAGTAACCTTGGGGCACGACCAAAAGGGCTATCCACTCTGG
TGAAGAGTGGTGTTCCTGAAGCATTGAGGGCAGAGGTATGGCAATTATTAGCAGGCTGCC
ATGACAACCAGGCAATGCTGGATAGATACCGACTTCTTATCACAAAGGTAGGAGCTCTTT
TCATCTTATTCTCATGGGACAATATATTAAGTAAATCCCATTTTCATAGTTCCAGTAAGT
CATAAGTGCTTTGAATTTCATTAAAAACTGTATTGGTGTTGTTCAGTGAATAGTTCTTTT
GTTCTGGACACTTGTTGGATGGTGATAAACAATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAGGTTGTGAGTCTACAGCGAGAGTCTGAGAAGGAGGAACCAGTCACTCCTACTAGTG
GAGGAGGTCCATTGTCACCCCAGGGGGATGAAGCAGAAGAGGAGAGTGATAATGAACTTT
CAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTATATTCTTGGGGAG
AATTGCTAGGAAGATGGCACAGTAACCTTGGGGCACGACCAAAAGGGCTATCCACTCTGG
TGAAGAGTGGTGTTCCTGAAGCATTGAGGGCAGAGGTATGGCAATTATTAGCAGGCTGCC
ATGACAACCAGGCAATGCTGGATAGATACCGACTTCTTATCACAAAGGTAGGAGCTCTTT
TCATCTTATTCTCATGGGACAATATATTAAGTAAATCCCATTTTCATAGTTCCAGTAAGT
CATAAGTGCTTTGAATTTCATTAAAAACTGTATTGGTGTTGTTCAGTGAATAGTTCTTTT
GTTCTGGACACTTGTTGGATGGTGATAAACAATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55588816|ref|XP_514012.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55588816|ref|XP_514012.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-353, + strand, RNAz p=0.559709

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-353, + strand, RNAz p=0.559709

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               196-514, gnl|bosTau2|chr16 (44070423-44070744)
               

               
               196-514, gnl|Hg17|chr1 (171094789-171095110)
               

               
               196-514, gnl|Mm7|chr1 (160589449-160589139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-514, gnl|bosTau2|chr16 (44070423-44070744)
               

               
               196-514, gnl|Hg17|chr1 (171094789-171095110)
               

               
               196-514, gnl|Mm7|chr1 (160589449-160589139)

	196-514, gnl\|bosTau2\|chr16 (44070423-44070744)
	196-514, gnl\|Hg17\|chr1 (171094789-171095110)
	196-514, gnl\|Mm7\|chr1 (160589449-160589139)