Non-Coding RNA Search

Ss1.1-Pig4-TMW8027A12.5

Sequence:


               
               ACGGGCCCTCTAGGCCGCGGCTAGGTTGCAGCTGGCCGTCTTGCAGGGCCTGGGCCCCCT
CTGTGAGCGACTGGACCTAGGTGAGGGTGACCTGAATAAAGTGGCGGATGCCTGCTTGAT
TTACCTCAGCGCCAAACAGCCCGTGAAATTACAAGAGGCTGCCAGGAGCGTTTTCCTCCA
CTTGATGAAGGTAGACCCAGACTCCACCTGGTTCCTCCTGAACGAACTTTACTGCCCAGA
GGAGTTCACACCTCCCCACCCCAGCCTCCACCCGGTGCAGCTGCGGGGGTCCACCAGCCC
CCAGAACCCATACACAGCCAATGTGCTCCTCCTGCTCCAACAGCTGCCGTGACCTCATCC
CTTCCTCCCTGCCAAGGACGAAAGACATGGGGCCGACCCCACCCTGGCCGAGGGCGGTGG
TAGCAGCAGCAGAGAAGACTGCCAAGGTGGATTAGACAGCCGATCGATTTATAAATTGAT
CGATCACACAACTGCTTAGAAATTGGATTGAAGGAAAGTAGCTGACTTATTTATATTTCA
TACCTGGTGTTTTCAAATGACATTGTCTGGCAGCTCTAAGGGCTTAACTCCTTCGCTTAC
CATCTCTGCGGCCCTGGCTGCCTCAAAGGCCACCCCACATACACACCCACACCCGAGAAC
TTGAGGACACGTGGGGCAGAGGCCTGTACCACGCATCTTGTGTGTCTTGCCTGAGGACCA
GGACCACATGGAAGGATCACACATGATCTCAGAACAAGAACACTGGCCTGCAGCACAGAC
TGCATTCTCAAATCAGGAGCTGGAACCTCACCTGTGCTTTGGAAGAAAATGAAATAAAGG
CACTTCTTGGAGGAAAAGTATGATCACGATCTCACTTTGAAGTTTGTTATTTAAATTGAG
TTTTGTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGCCCTCTAGGCCGCGGCTAGGTTGCAGCTGGCCGTCTTGCAGGGCCTGGGCCCCCT
CTGTGAGCGACTGGACCTAGGTGAGGGTGACCTGAATAAAGTGGCGGATGCCTGCTTGAT
TTACCTCAGCGCCAAACAGCCCGTGAAATTACAAGAGGCTGCCAGGAGCGTTTTCCTCCA
CTTGATGAAGGTAGACCCAGACTCCACCTGGTTCCTCCTGAACGAACTTTACTGCCCAGA
GGAGTTCACACCTCCCCACCCCAGCCTCCACCCGGTGCAGCTGCGGGGGTCCACCAGCCC
CCAGAACCCATACACAGCCAATGTGCTCCTCCTGCTCCAACAGCTGCCGTGACCTCATCC
CTTCCTCCCTGCCAAGGACGAAAGACATGGGGCCGACCCCACCCTGGCCGAGGGCGGTGG
TAGCAGCAGCAGAGAAGACTGCCAAGGTGGATTAGACAGCCGATCGATTTATAAATTGAT
CGATCACACAACTGCTTAGAAATTGGATTGAAGGAAAGTAGCTGACTTATTTATATTTCA
TACCTGGTGTTTTCAAATGACATTGTCTGGCAGCTCTAAGGGCTTAACTCCTTCGCTTAC
CATCTCTGCGGCCCTGGCTGCCTCAAAGGCCACCCCACATACACACCCACACCCGAGAAC
TTGAGGACACGTGGGGCAGAGGCCTGTACCACGCATCTTGTGTGTCTTGCCTGAGGACCA
GGACCACATGGAAGGATCACACATGATCTCAGAACAAGAACACTGGCCTGCAGCACAGAC
TGCATTCTCAAATCAGGAGCTGGAACCTCACCTGTGCTTTGGAAGAAAATGAAATAAAGG
CACTTCTTGGAGGAAAAGTATGATCACGATCTCACTTTGAAGTTTGTTATTTAAATTGAG
TTTTGTTTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12847979|dbj|BAB27782.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12847979|dbj|BAB27782.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               393-512, - strand, RNAz p=0.992895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-512, - strand, RNAz p=0.992895

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               358-901, gnl|bosTau2|chr13 (48735828-48736382)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               358-901, gnl|bosTau2|chr13 (48735828-48736382)