Ss1.1-Pig4-TMW8027C19.3
|
GTTTACAAACCCGAGGGACTCTTATGGGAAACCACTAGTGAAGAACCGGGAAGCTGAGCT
TCTCTACTTTGCTGACGTGTGTGCAGGCCCAGGGGGCTTCTCGGAGTACGTGCTCTGGAG
GAAGAAGTGGCACGCAAAGGGCTTTGGGATGACTCTGAAGGGGCCTAATGACTTTAAGCT
GGAAGACTTCTACTCAGCTTCCAGTGAGCTCTTTGAACCCTACTATGGTGAGGGTGGGAT
CGACGGAGATGGAGACATCACCCGCCCGGAGAACATCACTGCTTTTCGGAATTTTGTCTT
GGATAACACAGATCGCAAAGGTGTCCATTTTCTGATGGCTGATGGGGGTTTCTCAGTGGA
AGGGCAGGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTACTCTGTCAATTCCTCAT
GGCACTCTCTGTTGTTCGGACAGGAGGCCACTTCATCTGTAAAACCTTTGACCTCTTCAC
ACCGTTCAGCGTGGGGCTTATCTACCTGCTGTACTGCTGCTTTGAACGAGTGTGTCTCTT
TAAGCCGATTACCAGTCGTCCTGCCAACTCAGAGAGGTATGTGGTGTGCAAGGGCCTGAA
GGTGGGCACAGATGACGTACGGGATTACCTCTTCTCAGTCAATATTAAGCTCAACCAGCT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTTACAAACCCGAGGGACTCTTATGGGAAACCACTAGTGAAGAACCGGGAAGCTGAGCT
TCTCTACTTTGCTGACGTGTGTGCAGGCCCAGGGGGCTTCTCGGAGTACGTGCTCTGGAG
GAAGAAGTGGCACGCAAAGGGCTTTGGGATGACTCTGAAGGGGCCTAATGACTTTAAGCT
GGAAGACTTCTACTCAGCTTCCAGTGAGCTCTTTGAACCCTACTATGGTGAGGGTGGGAT
CGACGGAGATGGAGACATCACCCGCCCGGAGAACATCACTGCTTTTCGGAATTTTGTCTT
GGATAACACAGATCGCAAAGGTGTCCATTTTCTGATGGCTGATGGGGGTTTCTCAGTGGA
AGGGCAGGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTACTCTGTCAATTCCTCAT
GGCACTCTCTGTTGTTCGGACAGGAGGCCACTTCATCTGTAAAACCTTTGACCTCTTCAC
ACCGTTCAGCGTGGGGCTTATCTACCTGCTGTACTGCTGCTTTGAACGAGTGTGTCTCTT
TAAGCCGATTACCAGTCGTCCTGCCAACTCAGAGAGGTATGTGGTGTGCAAGGGCCTGAA
GGTGGGCACAGATGACGTACGGGATTACCTCTTCTCAGTCAATATTAAGCTCAACCAGCT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
28-234, gnl|bosTau2|chr23 (10408121-10408326) |
|
28-234, gnl|canFam2|chr12 (9480200-9480442) |
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28-234, gnl|danRer3|chr23 (50084621-50084828) |
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28-234, gnl|echTel1|scaffold_322334 (130074-130304) |
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28-234, gnl|fr1|chrUn (53274849-53274633) |
|
28-234, gnl|galGal2|chr3 (26496704-26496477) |
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28-234, gnl|hg17|chr6 (37534345-37534584) |
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28-234, gnl|Hg17|chr6 (37534365-37534570) |
|
28-234, gnl|loxAfr1|scaffold_6734 (89843-89604) |
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28-234, gnl|mm7|chr17 (27878148-27878391) |
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28-234, gnl|Mm7|chr17 (27878168-27878373) |
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28-234, gnl|monDom2|scaffold_42 (8688442-8688205) |
|
28-234, gnl|oryCun1|scaffold_211270 (49454-49215) |
|
28-234, gnl|panTro1|chr5 (38022515-38022754) |
|
28-234, gnl|rheMac2|chr4 (37236175-37236414) |
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28-234, gnl|rn3|chr20 (7997201-7997444) |
|
28-234, gnl|tetNig1|chr14 (2615909-2615703) |
|
28-234, gnl|xenTro1|scaffold_1268 (194959-194746) |
| |
|
442-578, gnl|bosTau2|chr23 (10411525-10411661) |
|
442-578, gnl|Hg17|chr6 (37537722-37537858) |
|
442-578, gnl|Mm7|chr17 (27882700-27882836) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
28-234, gnl|bosTau2|chr23 (10408121-10408326) |
|
28-234, gnl|canFam2|chr12 (9480200-9480442) |
|
28-234, gnl|danRer3|chr23 (50084621-50084828) |
|
28-234, gnl|echTel1|scaffold_322334 (130074-130304) |
|
28-234, gnl|fr1|chrUn (53274849-53274633) |
|
28-234, gnl|galGal2|chr3 (26496704-26496477) |
|
28-234, gnl|hg17|chr6 (37534345-37534584) |
|
28-234, gnl|Hg17|chr6 (37534365-37534570) |
|
28-234, gnl|loxAfr1|scaffold_6734 (89843-89604) |
|
28-234, gnl|mm7|chr17 (27878148-27878391) |
|
28-234, gnl|Mm7|chr17 (27878168-27878373) |
|
28-234, gnl|monDom2|scaffold_42 (8688442-8688205) |
|
28-234, gnl|oryCun1|scaffold_211270 (49454-49215) |
|
28-234, gnl|panTro1|chr5 (38022515-38022754) |
|
28-234, gnl|rheMac2|chr4 (37236175-37236414) |
|
28-234, gnl|rn3|chr20 (7997201-7997444) |
|
28-234, gnl|tetNig1|chr14 (2615909-2615703) |
|
28-234, gnl|xenTro1|scaffold_1268 (194959-194746) |
| |
|
442-578, gnl|bosTau2|chr23 (10411525-10411661) |
|
442-578, gnl|Hg17|chr6 (37537722-37537858) |
|
442-578, gnl|Mm7|chr17 (27882700-27882836) |
