Ss1.1-Pig4-TMW8027E17.5
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GTTGCCTCCTCCAGGGTTCCTGTGGGGTGCAAGTTTGCCCTGGGGCCCACATACGCACTT
ACTCCTTTTCCACACATCCCCACACAGGAGGTGTTCAAGGAACGCATTGGCTACCCTCAC
CTGCACGAAGTTCTGCAGAGCCACGGTCCCCCCACCCATCGGCTGTTGCAAGAGCTACTC
AACATGGTGAGGGCAGGGCCTTGGGATCAGGGTCCCGAGGGCAGCTAGGACCAAATCAGG
GCTACCACAGAAGGTGAGCTCTCCACCTTGGGGAACTGTGTTGACTATGGCCAGTACATA
GTGTGACCAGCAGCCTGACTGTATGTGTCAGTGTCACTGGGGTGAGGATGCTGAGCTGCA
ATGGGCTCAGAAGCTGCTGCATATCAGCGAGCCCCAGGATGATCCCAGGGATAGGCAGTT
GGGTAGGCCGACCCAGACAGAAAGCCGAGGACCGTTGCTGAGAGTGACAGTTGTCCATGT
ACTTCTGGCTTTCCTGAGCTTCAGACACATGTGAGCTGGATAGGGTAGTACATGTTGCTT
TCTCATGCTCTCTCCCCATTCTGCACACCCCTTGAGCTGGGCCTGGAACGGTCCAGTGTG
AGCTCAGGTAACACTGCTGGCGGTGGCAGCGGCAGCGGAACCCTCACTCCAGCCAGCCAG
CCTGGCACACCTTCCCCACTGGATGGGCCCCGGCCCTTTCCTCCTTCCCGTGGCCGCCAC
AGCTCCAGTCTCTCCAATGTGCTGGAGGATGGCAGCCTGCCAGAGCCCACCATCAGTGGA
GATGACACGTCTAATACCAGTAACCCTCAGGTGAGGCAAGCCCACCCTCTACCATTGCAT
GGCACCAAGGGAGGGCACCTCTGGGACGTGAGGCAGGCAGTGTATCATTTCCAAAGGTGT
GGTCCTGTTTGACCTCAGGGCTACAGCTGCCATTTGGGCCCGGTGCTGCCCCCTCATGGA
TTTCCTCTACAGAATGTTCCTGAGGTGTGTGGGGTGTTTCAGAGCAGAGCAAGTCATGCC
AAGACAGAGTTGGGGGCACTAGCCAGTCTTCAAAAGGCCCTTAAGAAAGCCTGGGGGGGT
CCCCTGGTGGCCTAGTAGTTAAGGATTCAGTATTGTCATCGCTGTGGCGTGAGTTGTATC
CTTGGCCTGGGGAACTTCACATGCTGCAGGTGTGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GTTGCCTCCTCCAGGGTTCCTGTGGGGTGCAAGTTTGCCCTGGGGCCCACATACGCACTT
ACTCCTTTTCCACACATCCCCACACAGGAGGTGTTCAAGGAACGCATTGGCTACCCTCAC
CTGCACGAAGTTCTGCAGAGCCACGGTCCCCCCACCCATCGGCTGTTGCAAGAGCTACTC
AACATGGTGAGGGCAGGGCCTTGGGATCAGGGTCCCGAGGGCAGCTAGGACCAAATCAGG
GCTACCACAGAAGGTGAGCTCTCCACCTTGGGGAACTGTGTTGACTATGGCCAGTACATA
GTGTGACCAGCAGCCTGACTGTATGTGTCAGTGTCACTGGGGTGAGGATGCTGAGCTGCA
ATGGGCTCAGAAGCTGCTGCATATCAGCGAGCCCCAGGATGATCCCAGGGATAGGCAGTT
GGGTAGGCCGACCCAGACAGAAAGCCGAGGACCGTTGCTGAGAGTGACAGTTGTCCATGT
ACTTCTGGCTTTCCTGAGCTTCAGACACATGTGAGCTGGATAGGGTAGTACATGTTGCTT
TCTCATGCTCTCTCCCCATTCTGCACACCCCTTGAGCTGGGCCTGGAACGGTCCAGTGTG
AGCTCAGGTAACACTGCTGGCGGTGGCAGCGGCAGCGGAACCCTCACTCCAGCCAGCCAG
CCTGGCACACCTTCCCCACTGGATGGGCCCCGGCCCTTTCCTCCTTCCCGTGGCCGCCAC
AGCTCCAGTCTCTCCAATGTGCTGGAGGATGGCAGCCTGCCAGAGCCCACCATCAGTGGA
GATGACACGTCTAATACCAGTAACCCTCAGGTGAGGCAAGCCCACCCTCTACCATTGCAT
GGCACCAAGGGAGGGCACCTCTGGGACGTGAGGCAGGCAGTGTATCATTTCCAAAGGTGT
GGTCCTGTTTGACCTCAGGGCTACAGCTGCCATTTGGGCCCGGTGCTGCCCCCTCATGGA
TTTCCTCTACAGAATGTTCCTGAGGTGTGTGGGGTGTTTCAGAGCAGAGCAAGTCATGCC
AAGACAGAGTTGGGGGCACTAGCCAGTCTTCAAAAGGCCCTTAAGAAAGCCTGGGGGGGT
CCCCTGGTGGCCTAGTAGTTAAGGATTCAGTATTGTCATCGCTGTGGCGTGAGTTGTATC
CTTGGCCTGGGGAACTTCACATGCTGCAGGTGTGAC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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564-712, - strand, RNAmicro p=0.984926 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
564-712, - strand, RNAmicro p=0.984926 |
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5-403, gnl|bosTau2|chr22 (41054770-41055169) |
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5-403, gnl|Hg17|chr3 (47010866-47011413) |
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5-403, gnl|Mm7|chr9 (110337158-110336744) |
| |
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539-816, gnl|bosTau2|chr22 (41060344-41060621) |
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539-816, gnl|canFam2|chr20 (44815651-44815357) |
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539-816, gnl|danRer3|chr16 (9331310-9331068) |
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539-816, gnl|dasNov1|scaffold_108852 (4388-4098) |
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539-816, gnl|fr1|chrUn (65674358-65674098) |
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539-816, gnl|galGal2|chrUn (83291592-83291864) |
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539-816, gnl|hg17|chr3 (47016620-47016908) |
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539-816, gnl|Hg17|chr3 (47016627-47016904) |
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539-816, gnl|loxAfr1|scaffold_71181 (7801-7514) |
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539-816, gnl|mm7|chr9 (110331664-110331377) |
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539-816, gnl|Mm7|chr9 (110331655-110331378) |
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539-816, gnl|monDom2|scaffold_5 (81381666-81381937) |
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539-816, gnl|oryCun1|scaffold_96207 (1348-1634) |
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539-816, gnl|panTro1|chr2 (48474670-48474958) |
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539-816, gnl|rheMac2|chr2 (89541190-89540899) |
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539-816, gnl|rn3|chr8 (115034024-115033737) |
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539-816, gnl|tetNig1|chr8 (6854680-6854928) |
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539-816, gnl|xenTro1|scaffold_1568 (25759-26033) |
| |
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841-1077, gnl|bosTau2|chr22 (41060624-41060857) |
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841-1077, gnl|Hg17|chr3 (47016907-47017158) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-403, gnl|bosTau2|chr22 (41054770-41055169) |
|
5-403, gnl|Hg17|chr3 (47010866-47011413) |
|
5-403, gnl|Mm7|chr9 (110337158-110336744) |
| |
|
539-816, gnl|bosTau2|chr22 (41060344-41060621) |
|
539-816, gnl|canFam2|chr20 (44815651-44815357) |
|
539-816, gnl|danRer3|chr16 (9331310-9331068) |
|
539-816, gnl|dasNov1|scaffold_108852 (4388-4098) |
|
539-816, gnl|fr1|chrUn (65674358-65674098) |
|
539-816, gnl|galGal2|chrUn (83291592-83291864) |
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539-816, gnl|hg17|chr3 (47016620-47016908) |
|
539-816, gnl|Hg17|chr3 (47016627-47016904) |
|
539-816, gnl|loxAfr1|scaffold_71181 (7801-7514) |
|
539-816, gnl|mm7|chr9 (110331664-110331377) |
|
539-816, gnl|Mm7|chr9 (110331655-110331378) |
|
539-816, gnl|monDom2|scaffold_5 (81381666-81381937) |
|
539-816, gnl|oryCun1|scaffold_96207 (1348-1634) |
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539-816, gnl|panTro1|chr2 (48474670-48474958) |
|
539-816, gnl|rheMac2|chr2 (89541190-89540899) |
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539-816, gnl|rn3|chr8 (115034024-115033737) |
|
539-816, gnl|tetNig1|chr8 (6854680-6854928) |
|
539-816, gnl|xenTro1|scaffold_1568 (25759-26033) |
| |
|
841-1077, gnl|bosTau2|chr22 (41060624-41060857) |
|
841-1077, gnl|Hg17|chr3 (47016907-47017158) |
