Non-Coding RNA Search

Ss1.1-Pig4-TMW8027F20.3

Sequence:


               
               CTACTACGTGGGTGAGTGGGTGAGCGGCAGCCTGCACCCCCGCTGCCTGAGCGCCTCCCC
TGGGAGTGGGAGAGGAGGGGGAAGGCTTCGGTACTTAAAGAAACCCACTCTTTCCTCCCC
GCCTGCCCCAGATGTGCAGAAATTCCCCCTGCGCATGAAAGACAACGACCTCCTTGTCAG
CGAGCTCTACCACGACCCGGCGGAGGATGGGGTCACAGCCCTCAGTGTCTACCTCACCCC
CAAGACCAGTAAGCTGGGACTCAGCTCCTGCCTCAGCCGTCAGCAGCCACCCCTGGCCCC
CACCCGCTGCTCCCTGCCCATCCCTTGTGTAGCATGACCCAGTGAGATTATTGAGAGGGA
GATGGATTCAACTCATTTAGTCATTCAACAAACACCGAGCACCTCTTACATGTAAGCTCT
GTTCCAGGTGCTCGCATGACGGGCCTCTCCACCAGAGCCTAAACTGATCCTGAGGAGTTG
ATCTCTGTGTGCCTTTCCCATTTCTGTGACGAGGGCTTGAGGCTTGCATGTCTTACGGTC
GACAAAGCCAAGTTCTCTGGCCTGGGACAGTCTCTGTGGTCTGTTTTCTTGATCACCAAT
GCAGGGAGACGGATTGATTTTTTTTGGTTTGTTTTTATTGAACTCTAAGTCCCATACCAT
AAAATTAAGATTTAGTAGTTTTTAGTAAACTCACATGGTTTTGCAGGCATCACCACTACC
TCATTCCAGAATGTTTATCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTACGTGGGTGAGTGGGTGAGCGGCAGCCTGCACCCCCGCTGCCTGAGCGCCTCCCC
TGGGAGTGGGAGAGGAGGGGGAAGGCTTCGGTACTTAAAGAAACCCACTCTTTCCTCCCC
GCCTGCCCCAGATGTGCAGAAATTCCCCCTGCGCATGAAAGACAACGACCTCCTTGTCAG
CGAGCTCTACCACGACCCGGCGGAGGATGGGGTCACAGCCCTCAGTGTCTACCTCACCCC
CAAGACCAGTAAGCTGGGACTCAGCTCCTGCCTCAGCCGTCAGCAGCCACCCCTGGCCCC
CACCCGCTGCTCCCTGCCCATCCCTTGTGTAGCATGACCCAGTGAGATTATTGAGAGGGA
GATGGATTCAACTCATTTAGTCATTCAACAAACACCGAGCACCTCTTACATGTAAGCTCT
GTTCCAGGTGCTCGCATGACGGGCCTCTCCACCAGAGCCTAAACTGATCCTGAGGAGTTG
ATCTCTGTGTGCCTTTCCCATTTCTGTGACGAGGGCTTGAGGCTTGCATGTCTTACGGTC
GACAAAGCCAAGTTCTCTGGCCTGGGACAGTCTCTGTGGTCTGTTTTCTTGATCACCAAT
GCAGGGAGACGGATTGATTTTTTTTGGTTTGTTTTTATTGAACTCTAAGTCCCATACCAT
AAAATTAAGATTTAGTAGTTTTTAGTAAACTCACATGGTTTTGCAGGCATCACCACTACC
TCATTCCAGAATGTTTATCTCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               16-157, - strand, RNAz p=0.998523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-157, - strand, RNAz p=0.998523

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               16-496, gnl|bosTau2|chr18 (41593158-41593670)
               

               
               16-496, gnl|Hg17|chr19 (45781228-45782025)
               


               
               545-735, gnl|bosTau2|chr18 (41594032-41594222)
               

               
               545-735, gnl|Hg17|chr19 (45782098-45782285)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-496, gnl|bosTau2|chr18 (41593158-41593670)
               

               
               16-496, gnl|Hg17|chr19 (45781228-45782025)
               


               
               545-735, gnl|bosTau2|chr18 (41594032-41594222)
               

               
               545-735, gnl|Hg17|chr19 (45782098-45782285)

	16-496, gnl\|bosTau2\|chr18 (41593158-41593670)
	16-496, gnl\|Hg17\|chr19 (45781228-45782025)

	545-735, gnl\|bosTau2\|chr18 (41594032-41594222)
	545-735, gnl\|Hg17\|chr19 (45782098-45782285)