Non-Coding RNA Search

Ss1.1-Pig4-TMW8027G20.5

Sequence:


               
               TATACTCTGGCTTATCAAACTCATTTGATGAGATTTCGATAAGATACAGCTGTTTGCTCT
TCAAGCAGTTTGGCTGGAATCAGTGGTTTCCGGCAAACACTGACTTGCCTTTCTTGATTG
CAGTTGCGGTTTTCAGCTTTCTTAGTAGCTCAGCTTGTACTTGAGTCACCAGATGCAAAT
GAGACATTTCTCTCTTTAGTTCCCAGTATGCATTTTGCATATTATCACTGAAATACAGGA
TTTTAAAAAAAAAAAGGTTAATGCTTATCATTCTCTTTGTGGAGAGAAGGTTATAACTTC
AAAATACAAGTGAGCTGATCTGTATTTCTGCTTAAATTAGTTTTGAAATAGTATAAATTA
AACTCCCTCATTAAATTACTGAAATATTTAATTAGGGCATTATAACAAGTGAAAAAAATC
TTAATTCATAATAACACTGACTTAAGTATTTAGCAACTAAGTGAAGTGTATTAAACAGAG
GAGGATCTTATAAAAAGTATTCTAAACAATGAGTTTAATGGCTGTCTTCTCAGAATTGAG
ATTTCATCATAGCTTATGATGTGCAGTTGTGTTGATAGATTTAATAGTAAGGAATATGTT
CTTCATTTGCAAATCTGATCAAGAATAAAGTGAGATTCATTCATGTATGGATTTCAAATC
TGTATTTATCTTTTGATTACTCTTTAGATGTTGTGAACTGAAATGCTGTTATCAACCGCT
GAATGTATACCCAAGTCCACATTACAATAAAATTTAGGTTTCATGCATTCCATTCTTTTA
TGTGTGACTGGGCTGTCTCATATTGTTGGTTCTAAACCAATGTGACATGACAGCACAGGA
CATGAAGAGCCAGATGATTTCCTGGAAGAAAAGAAGCTAGAGAGAGAGGATTATCTGAAA
CAGAAATAAAAACTTAATAAATACCTCTCATTCTTATAATTAAAAGTGTTTCACCTCATT
TGCTGAGAAGTTATAAATCAGTTATTTTAAACCTAATTTTACTGAGTTTCATCTTCTATT
AAGCATTCTTATTTGGATATTGATGATTTTTTTCTTTTTTACGTTTTTAATTGCCAACTA
AGTAAATCAAAATCTTCAACACATAGTCTTATTTGCTGTATGAAAATACACAAAATATTC
AATATAAGAACAATGGCTCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACTCTGGCTTATCAAACTCATTTGATGAGATTTCGATAAGATACAGCTGTTTGCTCT
TCAAGCAGTTTGGCTGGAATCAGTGGTTTCCGGCAAACACTGACTTGCCTTTCTTGATTG
CAGTTGCGGTTTTCAGCTTTCTTAGTAGCTCAGCTTGTACTTGAGTCACCAGATGCAAAT
GAGACATTTCTCTCTTTAGTTCCCAGTATGCATTTTGCATATTATCACTGAAATACAGGA
TTTTAAAAAAAAAAAGGTTAATGCTTATCATTCTCTTTGTGGAGAGAAGGTTATAACTTC
AAAATACAAGTGAGCTGATCTGTATTTCTGCTTAAATTAGTTTTGAAATAGTATAAATTA
AACTCCCTCATTAAATTACTGAAATATTTAATTAGGGCATTATAACAAGTGAAAAAAATC
TTAATTCATAATAACACTGACTTAAGTATTTAGCAACTAAGTGAAGTGTATTAAACAGAG
GAGGATCTTATAAAAAGTATTCTAAACAATGAGTTTAATGGCTGTCTTCTCAGAATTGAG
ATTTCATCATAGCTTATGATGTGCAGTTGTGTTGATAGATTTAATAGTAAGGAATATGTT
CTTCATTTGCAAATCTGATCAAGAATAAAGTGAGATTCATTCATGTATGGATTTCAAATC
TGTATTTATCTTTTGATTACTCTTTAGATGTTGTGAACTGAAATGCTGTTATCAACCGCT
GAATGTATACCCAAGTCCACATTACAATAAAATTTAGGTTTCATGCATTCCATTCTTTTA
TGTGTGACTGGGCTGTCTCATATTGTTGGTTCTAAACCAATGTGACATGACAGCACAGGA
CATGAAGAGCCAGATGATTTCCTGGAAGAAAAGAAGCTAGAGAGAGAGGATTATCTGAAA
CAGAAATAAAAACTTAATAAATACCTCTCATTCTTATAATTAAAAGTGTTTCACCTCATT
TGCTGAGAAGTTATAAATCAGTTATTTTAAACCTAATTTTACTGAGTTTCATCTTCTATT
AAGCATTCTTATTTGGATATTGATGATTTTTTTCTTTTTTACGTTTTTAATTGCCAACTA
AGTAAATCAAAATCTTCAACACATAGTCTTATTTGCTGTATGAAAATACACAAAATATTC
AATATAAGAACAATGGCTCTCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               10-283, - strand, RNAz p=0.797902
               

               
               753-869, + strand, RNAz p=0.532149

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-283, - strand, RNAz p=0.797902
               

               
               753-869, + strand, RNAz p=0.532149

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               789-865, + strand, RNAmicro p=0.929786

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               789-865, + strand, RNAmicro p=0.929786

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_203326, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_203326, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1162, gnl|bosTau2|chr22 (14931-13819)
               

               
               10-1162, gnl|Hg17|chr3 (28343223-28344346)
               

               
               10-1162, gnl|Mm7|chr9 (117741210-117740191)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1162, gnl|bosTau2|chr22 (14931-13819)
               

               
               10-1162, gnl|Hg17|chr3 (28343223-28344346)
               

               
               10-1162, gnl|Mm7|chr9 (117741210-117740191)

	10-283, - strand, RNAz p=0.797902
	753-869, + strand, RNAz p=0.532149

	10-1162, gnl\|bosTau2\|chr22 (14931-13819)
	10-1162, gnl\|Hg17\|chr3 (28343223-28344346)
	10-1162, gnl\|Mm7\|chr9 (117741210-117740191)