Non-Coding RNA Search

Ss1.1-Pig4-TMW8027H01.5

Sequence:


               
               GGGAAATAAAAACTTTAGGGAGAGTCGCGGCCGCCCCCAGGCCCTGGGAAGAGGGAAGGG
TTGTTTTGGAGAGAGGCTGGGGTCTCATCCCGGTTTCACCCTTGATTCTTTTTCTGCTTT
ATTTATTTATTTATTTATTTATTTCCTGGCGTGGTTCCATCGCGTCATTCAGGATGCTAG
GGAATGATCCCTGAGCTGTCTGTTCCGGGATACTGGTTATTTTTTAGTTACTCTCTCAAC
GTAATTAGACACGTTTCCAGACATCGAAGAGACGGCTCTGCTTGCCAGTGCCAAGATAAA
CTGTCTGAATTTGACAAGGCATTCATGGTTTCGGTTTTTTTCGAGGAGTGTGGACGGAGC
TCTTGTGTTACTGACATCCTTGAGAATGCAGTCACAACTCAGCGCTCCGGAATGGGCGTC
CAGGACTATATCTGTTTTAGAAAGGCTTCTCCATATGATTATTTCACTCCTGATGGAGTA
CTACGTAAGCAGAGCTTTAAAGTGGGTTGACTTTTTGGTTTTTTTTTTTTTTTTAAAGAA
AACATTACAGTAAGTGGAGTTTCCACATAGCCGAGTTTTTGGGTGTGTGTGTGTTTCCTG
AAGGTTCTGGCCCCATTTCTGGTAGGGTTTCTAGCTACGTATCACTCCAAAAGCTCATAA
AGTGAAAATCTTCATCTGGGTTTGGGTGCTTCACTAACCCCACTTGTTAGTGTTAACTTT
AAGAACTTTAACCTGTTAATAACTTTAAGCAATGTTAACTTGTTAACTTTAAGAATTTCG
AAACCTTTAATGCTTTGAAATTGCAGCCCCCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAATAAAAACTTTAGGGAGAGTCGCGGCCGCCCCCAGGCCCTGGGAAGAGGGAAGGG
TTGTTTTGGAGAGAGGCTGGGGTCTCATCCCGGTTTCACCCTTGATTCTTTTTCTGCTTT
ATTTATTTATTTATTTATTTATTTCCTGGCGTGGTTCCATCGCGTCATTCAGGATGCTAG
GGAATGATCCCTGAGCTGTCTGTTCCGGGATACTGGTTATTTTTTAGTTACTCTCTCAAC
GTAATTAGACACGTTTCCAGACATCGAAGAGACGGCTCTGCTTGCCAGTGCCAAGATAAA
CTGTCTGAATTTGACAAGGCATTCATGGTTTCGGTTTTTTTCGAGGAGTGTGGACGGAGC
TCTTGTGTTACTGACATCCTTGAGAATGCAGTCACAACTCAGCGCTCCGGAATGGGCGTC
CAGGACTATATCTGTTTTAGAAAGGCTTCTCCATATGATTATTTCACTCCTGATGGAGTA
CTACGTAAGCAGAGCTTTAAAGTGGGTTGACTTTTTGGTTTTTTTTTTTTTTTTAAAGAA
AACATTACAGTAAGTGGAGTTTCCACATAGCCGAGTTTTTGGGTGTGTGTGTGTTTCCTG
AAGGTTCTGGCCCCATTTCTGGTAGGGTTTCTAGCTACGTATCACTCCAAAAGCTCATAA
AGTGAAAATCTTCATCTGGGTTTGGGTGCTTCACTAACCCCACTTGTTAGTGTTAACTTT
AAGAACTTTAACCTGTTAATAACTTTAAGCAATGTTAACTTGTTAACTTTAAGAATTTCG
AAACCTTTAATGCTTTGAAATTGCAGCCCCCTCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               113-250, - strand, RNAz p=0.985153
               

               
               331-472, + strand, RNAz p=0.964415

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-250, - strand, RNAz p=0.985153
               

               
               331-472, + strand, RNAz p=0.964415

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-716, gnl|bosTau2|chr19 (12146253-12145525)
               

               
               1-716, gnl|Hg17|chr17 (28227544-28226862)
               

               
               1-716, gnl|Mm7|chr11 (80860925-80860196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-716, gnl|bosTau2|chr19 (12146253-12145525)
               

               
               1-716, gnl|Hg17|chr17 (28227544-28226862)
               

               
               1-716, gnl|Mm7|chr11 (80860925-80860196)

	113-250, - strand, RNAz p=0.985153
	331-472, + strand, RNAz p=0.964415

	1-716, gnl\|bosTau2\|chr19 (12146253-12145525)
	1-716, gnl\|Hg17\|chr17 (28227544-28226862)
	1-716, gnl\|Mm7\|chr11 (80860925-80860196)