Non-Coding RNA Search

Ss1.1-Pig4-TMW8027I16.5

Sequence:


               
               GACATGCATCTCACCCATTACAGAATGGAAGATCTAATGCTCCTCTTATCTAGTAATCAC
ACCCTTCCTCCACCCAGTGCTTTCTCTCTGTTGAAGTGGTGTTACTTGAGTAGTTTCGGA
AACAGAGGCCTTGGCATCTGAAGCTTTCTACCATCTTCTCCTACCTGATCCAAATGCCCG
TCTTCTATATTTCACCAGCATCAACTGCTCATTCTTCTAATTTTCTACGCTAGAAAAAGA
GGCCATATTGAAGGCAAGGACTTGTTTCCTCATCGCTGCTACAACTCAGAGTGCTCCAGA
TTGGTTCCTCCACACAGTTGCTCTCAGGGCTGGATAGAGCACCTACGATCTGGATTTGAG
ATATTAGCTGGTAGTCAGGGTGACCGGGAGGATGGTGAGGCAAATGTTCTTCCTTCTGAG
GCTGCAGAGGCTGAAGGCCTGAAAGGCGTGTATGGATGCCCTCTGCTTCTCTATCCAGGC
TGTTTCTGGAAACATGCCTCCATGCTGGCTCATCACACCAGATCTGTCCACATGGGCCGC
TCTACAGCTTGCCTAGCACAGGCTCTGCTGAGAACCAGGCAAGAGCTATCTAGTTTGATT
CAGCTCAGAGAGGGCTATTGGGAACAGCCAGAAGGAAAACTGTATGTGATGGTGCTTCCA
GAGGTGGGTCATCTGTTCCCCCAGAAGGACTTCCCTCGGGGCCCTAGGCATCCCAGGGAC
ATCCATTAGGCTGGAATCTGGTATAGGTGTCTTTCTGCTAGAACTTTGCCTGGGGACTCT
GTTGACTTCTCTCCTGTGTGGACTTCTCTGTGGCTGTGTAACCCTGGTGAACCCTGAGGC
TGGGTAACTGCAGGGCAGTGCCTTGGAGGTGACCCAGGAACCTGGAGGTGACCCATCAAA
CTTGTGATGCATTCAAAACCAATCTCAGATTACCCCACTCCAGGAGATTTGGGTTCAAAC
TCACAGTGCAACCATCATCTTCGATTCACAGCAAGCGAGAATGTTCTCCAAAAGGGCTGA
GGCCGAATATCCTCAGGGAAGAAGACCTATCTTAGGAGTGACCTGCCTGGTCTCATGGAG
TGACATTTTGCTGGTCATTTGTACAGCATCCAGCTGGTGAAGGCCACCCACTCCAAGGCG
TGAGGGATGAAGCTTCCAGTTTGCTTCTGATGTTTTATTTATCTGTACTGGTAGCTTTAT
GTACGGTGTATCTTCTCTGTTTGGGCCTGAAGGCTGGTTAAGCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATGCATCTCACCCATTACAGAATGGAAGATCTAATGCTCCTCTTATCTAGTAATCAC
ACCCTTCCTCCACCCAGTGCTTTCTCTCTGTTGAAGTGGTGTTACTTGAGTAGTTTCGGA
AACAGAGGCCTTGGCATCTGAAGCTTTCTACCATCTTCTCCTACCTGATCCAAATGCCCG
TCTTCTATATTTCACCAGCATCAACTGCTCATTCTTCTAATTTTCTACGCTAGAAAAAGA
GGCCATATTGAAGGCAAGGACTTGTTTCCTCATCGCTGCTACAACTCAGAGTGCTCCAGA
TTGGTTCCTCCACACAGTTGCTCTCAGGGCTGGATAGAGCACCTACGATCTGGATTTGAG
ATATTAGCTGGTAGTCAGGGTGACCGGGAGGATGGTGAGGCAAATGTTCTTCCTTCTGAG
GCTGCAGAGGCTGAAGGCCTGAAAGGCGTGTATGGATGCCCTCTGCTTCTCTATCCAGGC
TGTTTCTGGAAACATGCCTCCATGCTGGCTCATCACACCAGATCTGTCCACATGGGCCGC
TCTACAGCTTGCCTAGCACAGGCTCTGCTGAGAACCAGGCAAGAGCTATCTAGTTTGATT
CAGCTCAGAGAGGGCTATTGGGAACAGCCAGAAGGAAAACTGTATGTGATGGTGCTTCCA
GAGGTGGGTCATCTGTTCCCCCAGAAGGACTTCCCTCGGGGCCCTAGGCATCCCAGGGAC
ATCCATTAGGCTGGAATCTGGTATAGGTGTCTTTCTGCTAGAACTTTGCCTGGGGACTCT
GTTGACTTCTCTCCTGTGTGGACTTCTCTGTGGCTGTGTAACCCTGGTGAACCCTGAGGC
TGGGTAACTGCAGGGCAGTGCCTTGGAGGTGACCCAGGAACCTGGAGGTGACCCATCAAA
CTTGTGATGCATTCAAAACCAATCTCAGATTACCCCACTCCAGGAGATTTGGGTTCAAAC
TCACAGTGCAACCATCATCTTCGATTCACAGCAAGCGAGAATGTTCTCCAAAAGGGCTGA
GGCCGAATATCCTCAGGGAAGAAGACCTATCTTAGGAGTGACCTGCCTGGTCTCATGGAG
TGACATTTTGCTGGTCATTTGTACAGCATCCAGCTGGTGAAGGCCACCCACTCCAAGGCG
TGAGGGATGAAGCTTCCAGTTTGCTTCTGATGTTTTATTTATCTGTACTGGTAGCTTTAT
GTACGGTGTATCTTCTCTGTTTGGGCCTGAAGGCTGGTTAAGCAAAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               296-476, - strand, RNAz p=0.977775
               

               
               1123-1241, - strand, RNAz p=0.87008

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-476, - strand, RNAz p=0.977775
               

               
               1123-1241, - strand, RNAz p=0.87008

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-1248, gnl|bosTau2|chr10 (35969249-35968064)
               

               
               64-1248, gnl|Hg17|chr15 (59016678-59015143)
               

               
               64-1248, gnl|Mm7|chr9 (68971272-68972787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-1248, gnl|bosTau2|chr10 (35969249-35968064)
               

               
               64-1248, gnl|Hg17|chr15 (59016678-59015143)
               

               
               64-1248, gnl|Mm7|chr9 (68971272-68972787)

	296-476, - strand, RNAz p=0.977775
	1123-1241, - strand, RNAz p=0.87008

	64-1248, gnl\|bosTau2\|chr10 (35969249-35968064)
	64-1248, gnl\|Hg17\|chr15 (59016678-59015143)
	64-1248, gnl\|Mm7\|chr9 (68971272-68972787)