Non-Coding RNA Search

Ss1.1-Pig4-TMW8027I18.3

Sequence:


               
               TTTGTCACCAGACCTTTTATTTCAAAAAAGCCTTGCCCTACCCCGCATGTATTAGAGATC
TGTCCTTTTTTCTCTCTCAACAGAGAACTATATATACACATTCATCTAGTTTAATAAATA
AAACACGGCTGCTGAAAGGAAAGTGTACTTTATTTAAACACTCAACCTCATTGTTCTACC
TTAAAAAATTTTTTTTAAGTCCTTCTTAGGATTGTGAAATTCTTTCAAAACAAATTAAAA
AGAAAACATTTTCTGTGATTTCTTTACAGATTCTGGACAATCAGGAAGTCCAAGCCACAA
TGATCCTGCCAAGAATCCTCCAGGTAAATATGTGTTCCAGGACGTTTGCAATCTGACATT
GTTGGAGAACAAAGGTACCACTGTATAGATAAACAGCCCATAATTGGTCAGCTGCCTATT
TTGTTCTGGCAGGCAGGTATGATCAGGACAAGATGTGATTCTATTTAGGCCCTTCACAGT
GGCAAATAATACTTCCATACTGGCATCATCAGTAGGCACCTAATCACTAGTGTTTTACTT
TTTGTTGGTGTCTTTGCAAATGAACAGTACATGCATTTCAGTTGTGTATCTTTGAGGTGC
TAAAAGTCACTGCTGTTTGAAAAGCCAAAAACCCTTCTAATGTTTCTTTCAAAACACACA
AACAAAAGTGAAAATTTTCATTCTCTTATTAGGGTTGATCAAGTCTCATTACTTGAAAAG
GGAGGTGGGGGTGGGTTATGTTTTTAGTGAAGGATTTTTGCAAACGAGTCTTTATGCCAT
GAGGTTTTTATGGGATTCCCAGAATCAGAAAACAATGAAAGTAGGACTTCATGCTTTTGA
TGCTTCTAAATCTGAACATACATAGACTATTGAGGTTGATTTAGGAATAATATTTTTTCT
CATGAGAGTAAAAACTAGTGCAATGAAGAATTTCTAATATTTTAATCTCATACAATTTTT
AATCATATCAGTGATTTTAATCAAAGAGTGCTCCAAGAATAAATTAACAACAAAAAAAAA
TTCAAACTAACCATACAGAACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTCACCAGACCTTTTATTTCAAAAAAGCCTTGCCCTACCCCGCATGTATTAGAGATC
TGTCCTTTTTTCTCTCTCAACAGAGAACTATATATACACATTCATCTAGTTTAATAAATA
AAACACGGCTGCTGAAAGGAAAGTGTACTTTATTTAAACACTCAACCTCATTGTTCTACC
TTAAAAAATTTTTTTTAAGTCCTTCTTAGGATTGTGAAATTCTTTCAAAACAAATTAAAA
AGAAAACATTTTCTGTGATTTCTTTACAGATTCTGGACAATCAGGAAGTCCAAGCCACAA
TGATCCTGCCAAGAATCCTCCAGGTAAATATGTGTTCCAGGACGTTTGCAATCTGACATT
GTTGGAGAACAAAGGTACCACTGTATAGATAAACAGCCCATAATTGGTCAGCTGCCTATT
TTGTTCTGGCAGGCAGGTATGATCAGGACAAGATGTGATTCTATTTAGGCCCTTCACAGT
GGCAAATAATACTTCCATACTGGCATCATCAGTAGGCACCTAATCACTAGTGTTTTACTT
TTTGTTGGTGTCTTTGCAAATGAACAGTACATGCATTTCAGTTGTGTATCTTTGAGGTGC
TAAAAGTCACTGCTGTTTGAAAAGCCAAAAACCCTTCTAATGTTTCTTTCAAAACACACA
AACAAAAGTGAAAATTTTCATTCTCTTATTAGGGTTGATCAAGTCTCATTACTTGAAAAG
GGAGGTGGGGGTGGGTTATGTTTTTAGTGAAGGATTTTTGCAAACGAGTCTTTATGCCAT
GAGGTTTTTATGGGATTCCCAGAATCAGAAAACAATGAAAGTAGGACTTCATGCTTTTGA
TGCTTCTAAATCTGAACATACATAGACTATTGAGGTTGATTTAGGAATAATATTTTTTCT
CATGAGAGTAAAAACTAGTGCAATGAAGAATTTCTAATATTTTAATCTCATACAATTTTT
AATCATATCAGTGATTTTAATCAAAGAGTGCTCCAAGAATAAATTAACAACAAAAAAAAA
TTCAAACTAACCATACAGAACCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               176-294, + strand, RNAz p=0.680744

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-294, + strand, RNAz p=0.680744

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-829, gnl|bosTau2|chr6 (66756686-66755837)
               

               
               2-829, gnl|Hg17|chr9 (14170054-14169216)
               

               
               2-829, gnl|Mm7|chr4 (81787659-81786859)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-829, gnl|bosTau2|chr6 (66756686-66755837)
               

               
               2-829, gnl|Hg17|chr9 (14170054-14169216)
               

               
               2-829, gnl|Mm7|chr4 (81787659-81786859)

	2-829, gnl\|bosTau2\|chr6 (66756686-66755837)
	2-829, gnl\|Hg17\|chr9 (14170054-14169216)
	2-829, gnl\|Mm7\|chr4 (81787659-81786859)