Non-Coding RNA Search

Ss1.1-Pig4-TMW8027J15.5

Sequence:


               
               CAACCATAGTAATTCTGGAGGTGGTTGGCATTCGAGTAGTGGAATGGTAGATTGGAATCA
TAATGGTGCAGGAAGGAATTCCAGTTGGCATTCTGAAGGAACAGGTGGCTTTTCCAGTTG
GCATATGAACAGCAGTAACGGAAACTGGAAATCCAATGGACGTAGTGCAAATAGTTGGAA
TTACAGTGGCCCCGGAGACAAATTTCAACCAAGCAGAAACAGAAATTCTAACTGTCAAAT
GGAGGACATGACTATGTTATGGAATAAGAAATCTAAGTCAGGCAAATACAGTCAAGGGAG
ATACAGTTGGCAGCGGCAAGAAAATGACAAGGTTGGTACAGTTGCCACATACAGAGGTCC
TTCTGAAGGATTTACAAGTGATAGGTTTCCTTCAGAAGGCTTACTTGACTTCAGTTTTGA
GCAGCTGGAAAGCCAAACCACTAAACAAACAGATAATACAGCTTCCAAAATTGGTGGGAA
GAATGGCAGTGTAGCAAGGGAAAAGCTCCATCGCTGGACTCCTTACCCTTCCCAGAAGAC
TTTGGATTTACAATCAGGAATGAAAGAAGTCACTGGTAACAAGTCAGAAGTGATAGAGAA
GCCTCTCTTTGATTTTAGCCTCATAACTGGAGGAACAAAAGACCCCCAAGTTGATGAAAC
AAATAATCCCTCAATGCTGAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCATAGTAATTCTGGAGGTGGTTGGCATTCGAGTAGTGGAATGGTAGATTGGAATCA
TAATGGTGCAGGAAGGAATTCCAGTTGGCATTCTGAAGGAACAGGTGGCTTTTCCAGTTG
GCATATGAACAGCAGTAACGGAAACTGGAAATCCAATGGACGTAGTGCAAATAGTTGGAA
TTACAGTGGCCCCGGAGACAAATTTCAACCAAGCAGAAACAGAAATTCTAACTGTCAAAT
GGAGGACATGACTATGTTATGGAATAAGAAATCTAAGTCAGGCAAATACAGTCAAGGGAG
ATACAGTTGGCAGCGGCAAGAAAATGACAAGGTTGGTACAGTTGCCACATACAGAGGTCC
TTCTGAAGGATTTACAAGTGATAGGTTTCCTTCAGAAGGCTTACTTGACTTCAGTTTTGA
GCAGCTGGAAAGCCAAACCACTAAACAAACAGATAATACAGCTTCCAAAATTGGTGGGAA
GAATGGCAGTGTAGCAAGGGAAAAGCTCCATCGCTGGACTCCTTACCCTTCCCAGAAGAC
TTTGGATTTACAATCAGGAATGAAAGAAGTCACTGGTAACAAGTCAGAAGTGATAGAGAA
GCCTCTCTTTGATTTTAGCCTCATAACTGGAGGAACAAAAGACCCCCAAGTTGATGAAAC
AAATAATCCCTCAATGCTGAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|48526620|gb|AAT45509.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|48526620|gb|AAT45509.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-240, - strand, RNAz p=0.73416
               

               
               318-477, + strand, RNAz p=0.995168

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-240, - strand, RNAz p=0.73416
               

               
               318-477, + strand, RNAz p=0.995168

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-684, gnl|bosTau2|chr10 (17263984-17263301)
               

               
               1-684, gnl|Hg17|chr15 (40531165-40530479)
               

               
               1-684, gnl|Mm7|chr2 (120276249-120275575)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr10 (17263984-17263301)
               

               
               1-684, gnl|Hg17|chr15 (40531165-40530479)
               

               
               1-684, gnl|Mm7|chr2 (120276249-120275575)

	41-240, - strand, RNAz p=0.73416
	318-477, + strand, RNAz p=0.995168

	1-684, gnl\|bosTau2\|chr10 (17263984-17263301)
	1-684, gnl\|Hg17\|chr15 (40531165-40530479)
	1-684, gnl\|Mm7\|chr2 (120276249-120275575)