Non-Coding RNA Search

Ss1.1-Pig4-TMW8027M16.5

Sequence:


               
               GCGGCCGCTGGCGTTGCGGCGACCGTCCCGAGCCGTGTGCGGTACCGCCTAGCAGCCACA
AAACCCCTGTGTTCATCTCTCCTAGTCCTACTCCAGGCGCCCCAGCCGCTGTCCAACCCT
TCCGCCAGGGTTGCGCAGCGGCTTGCACATCCCTCGGCCCGAGTACGCGCTTTGCACCTG
CCTGCGCAAAAACATGTTGCAGAAACCCGAGAGCGGGGTTCTCCCCGTCCCTCAAGTCGA
GGGGGAGATGGATGGCAGCCATGACGGTGAGACCCAGGCCCTGACCGTCTCGCAGGAGGA
GGCCCCGAGCCCCCTCCTGCAAGAGAGCCCAGAGGAGGACCTTGACGCAGTAAAGGAGGA
AGGGGCTGCGGAGCCCGCCCTCACCCCGAAAGGTGCGAGGGCCTTGGCAGCCAAAACTTT
GGCCCGGCGCCGGGCTTGCCGCCGTCTGGATCGGACGGTGGCCGAGTTGGTGCAGTTTCT
GCTGGTGAAGGACAAGAAGAAGAGTCCCATCACTCGCTCGGAGATGGTGAAGTATGTTAT
CGGAGACTTGAAGGATCTGTTCCCCGAGATCATCGCAAGGGCCGCAGAGCATCTGCGGTA
TGTCTTTGGTTTCGAGCTGAAACAGCTTGACCGCAAGCACCACACTTACATCCTGATGAA
CAAACTAAAACCTCCTGAGGATAAGGAGGAGGATCTGGGAGGAGATGGCCCCAGACTGGG
TCTCTTAATGATGATCTTGGGCCTTATCTACATGAAAGGTAATAGCGCCAGGGAGGCACA
GGTCTGGGAGATGCTGCGTCGGTTGGGGGTGCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGGCGTTGCGGCGACCGTCCCGAGCCGTGTGCGGTACCGCCTAGCAGCCACA
AAACCCCTGTGTTCATCTCTCCTAGTCCTACTCCAGGCGCCCCAGCCGCTGTCCAACCCT
TCCGCCAGGGTTGCGCAGCGGCTTGCACATCCCTCGGCCCGAGTACGCGCTTTGCACCTG
CCTGCGCAAAAACATGTTGCAGAAACCCGAGAGCGGGGTTCTCCCCGTCCCTCAAGTCGA
GGGGGAGATGGATGGCAGCCATGACGGTGAGACCCAGGCCCTGACCGTCTCGCAGGAGGA
GGCCCCGAGCCCCCTCCTGCAAGAGAGCCCAGAGGAGGACCTTGACGCAGTAAAGGAGGA
AGGGGCTGCGGAGCCCGCCCTCACCCCGAAAGGTGCGAGGGCCTTGGCAGCCAAAACTTT
GGCCCGGCGCCGGGCTTGCCGCCGTCTGGATCGGACGGTGGCCGAGTTGGTGCAGTTTCT
GCTGGTGAAGGACAAGAAGAAGAGTCCCATCACTCGCTCGGAGATGGTGAAGTATGTTAT
CGGAGACTTGAAGGATCTGTTCCCCGAGATCATCGCAAGGGCCGCAGAGCATCTGCGGTA
TGTCTTTGGTTTCGAGCTGAAACAGCTTGACCGCAAGCACCACACTTACATCCTGATGAA
CAAACTAAAACCTCCTGAGGATAAGGAGGAGGATCTGGGAGGAGATGGCCCCAGACTGGG
TCTCTTAATGATGATCTTGGGCCTTATCTACATGAAAGGTAATAGCGCCAGGGAGGCACA
GGTCTGGGAGATGCTGCGTCGGTTGGGGGTGCGTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61859690|ref|XP_596928.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859690|ref|XP_596928.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               50-448, - strand, RNAz p=0.999378
               

               
               569-688, - strand, RNAz p=0.507428

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-448, - strand, RNAz p=0.999378
               

               
               569-688, - strand, RNAz p=0.507428

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-816, gnl|bosTau2|chr1 (53759136-53759940)
               

               
               11-816, gnl|Hg17|chr3 (185912492-185911713)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-816, gnl|bosTau2|chr1 (53759136-53759940)
               

               
               11-816, gnl|Hg17|chr3 (185912492-185911713)

	50-448, - strand, RNAz p=0.999378
	569-688, - strand, RNAz p=0.507428

	11-816, gnl\|bosTau2\|chr1 (53759136-53759940)
	11-816, gnl\|Hg17\|chr3 (185912492-185911713)