Ss1.1-Pig4-TMW8027M18.3
|
CTGCTTTGGAGAATGGTGGTGGCTACGGGTTACGGTTCATTCTTCAGCTCCGTGAACAAG
AACTGGGATTCCGGTAACATCTTTCCGGGGCCTGTCCAAGATCTGATACACCAGCACTCA
TAAGAAAACATCTTTTTGAGGTTTGGAACTGCTATAACCAACTGAAAGGTGGCTACGAGT
CTGAATTGCCTGTTCTGTGGTCAGCGCAACGCCCAAGGCCAAGGGGAAGACCCGGAGGCA
GAAGTTTTGTTGCAATATTAACCTGAAGCGCCTGAACAGGAATGCTCCACGGAGGGATCC
AGTGCTCCCACATCCATTACGCCTGGGACCAAACCAAATCGGTGCGGCAGAACCTGGCCG
AGATGGGTTTGACTATGGACCCCAACAGGGCAGTGCCCCTTATTAAGAGAAAGGTAAAAG
CCATGGAGGTGGACGGAGAGGAGAGGCTGAAGGAGCTTGTGTGGAAGCCCTATGTGCTCA
ATGACCTAGAGGGAGAAGCCAGCCTTCCAGAAAAGAAAGGAAATATGCTGTCTCGGGACC
TCATTAACTGCGTTTGCTATATGGTGGAGAACCATGGAGAGGACTACAAGGCTATGGCGC
TGGAGGAGAAGAATTACTAAGACACCACAAAACAGATTCAAAATAAGATCAACGTCTATA
AGTGTTTTTACCCAGCAAAGTGGCAAGCCTTTGTTGATTCTTTACAGAAGAATAAGATGG
AAGTTGATTGACTGGCTTACCCCTGCCCCAGGTTGAGTCTTCCTCCTGGACCAGAGAAGT
TGGAGCCAGAGTTTATTAAAGCAAGGAGGGGTATGCAGCTCCAGATGAGGCTGACCAGAC
CTCATGGGATCAAAACGTTACATGCACACATATACACACACAGTCTCTCTCACACTTCCC
TTTGGGGAAGGTACTGTCTCCCAGAGGCTCCCATTTCTGTTCTTTTGGGGGCTCTGGGAA
AAGCCAGAACTTGCTGTCCTCAGAGTGAGTAGTTTGGTTGCATGTAGTCTATAGACAATA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCTTTGGAGAATGGTGGTGGCTACGGGTTACGGTTCATTCTTCAGCTCCGTGAACAAG
AACTGGGATTCCGGTAACATCTTTCCGGGGCCTGTCCAAGATCTGATACACCAGCACTCA
TAAGAAAACATCTTTTTGAGGTTTGGAACTGCTATAACCAACTGAAAGGTGGCTACGAGT
CTGAATTGCCTGTTCTGTGGTCAGCGCAACGCCCAAGGCCAAGGGGAAGACCCGGAGGCA
GAAGTTTTGTTGCAATATTAACCTGAAGCGCCTGAACAGGAATGCTCCACGGAGGGATCC
AGTGCTCCCACATCCATTACGCCTGGGACCAAACCAAATCGGTGCGGCAGAACCTGGCCG
AGATGGGTTTGACTATGGACCCCAACAGGGCAGTGCCCCTTATTAAGAGAAAGGTAAAAG
CCATGGAGGTGGACGGAGAGGAGAGGCTGAAGGAGCTTGTGTGGAAGCCCTATGTGCTCA
ATGACCTAGAGGGAGAAGCCAGCCTTCCAGAAAAGAAAGGAAATATGCTGTCTCGGGACC
TCATTAACTGCGTTTGCTATATGGTGGAGAACCATGGAGAGGACTACAAGGCTATGGCGC
TGGAGGAGAAGAATTACTAAGACACCACAAAACAGATTCAAAATAAGATCAACGTCTATA
AGTGTTTTTACCCAGCAAAGTGGCAAGCCTTTGTTGATTCTTTACAGAAGAATAAGATGG
AAGTTGATTGACTGGCTTACCCCTGCCCCAGGTTGAGTCTTCCTCCTGGACCAGAGAAGT
TGGAGCCAGAGTTTATTAAAGCAAGGAGGGGTATGCAGCTCCAGATGAGGCTGACCAGAC
CTCATGGGATCAAAACGTTACATGCACACATATACACACACAGTCTCTCTCACACTTCCC
TTTGGGGAAGGTACTGTCTCCCAGAGGCTCCCATTTCTGTTCTTTTGGGGGCTCTGGGAA
AAGCCAGAACTTGCTGTCCTCAGAGTGAGTAGTTTGGTTGCATGTAGTCTATAGACAATA |
|
gi|62460412|ref|NP_001014856.1| |
Protein identifier
|
gi|62460412|ref|NP_001014856.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
177-296, gnl|bosTau2|chr7 (25984398-25984280) |
|
177-296, gnl|canFam2|chr4 (40131627-40131487) |
|
177-296, gnl|dasNov1|scaffold_12920 (12698-12535) |
|
177-296, gnl|echTel1|scaffold_322816 (8064-7932) |
|
177-296, gnl|galGal2|chr13 (9400694-9400556) |
|
177-296, gnl|hg17|chr5 (175748007-175748148) |
|
177-296, gnl|Hg17|chr5 (175748180-175748059) |
|
177-296, gnl|mm7|chr13 (53674100-53674235) |
|
177-296, gnl|Mm7|chr13 (53674272-53674146) |
|
177-296, gnl|monDom2|scaffold_6 (18856364-18856223) |
|
177-296, gnl|oryCun1|scaffold_201790 (52305-52212) |
|
177-296, gnl|panTro1|chr4 (183199366-183199507) |
|
177-296, gnl|rheMac2|chr6 (172860283-172860424) |
|
177-296, gnl|rn3|chr17 (16085153-16085018) |
| |
|
304-416, gnl|bosTau2|chr7 (25984169-25984057) |
|
304-416, gnl|Hg17|chr5 (175747951-175747839) |
|
304-416, gnl|Mm7|chr13 (53674038-53673926) |
| |
|
589-1020, gnl|bosTau2|chr7 (25980086-25979667) |
|
589-1020, gnl|Hg17|chr5 (175743983-175743571) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
177-296, gnl|bosTau2|chr7 (25984398-25984280) |
|
177-296, gnl|canFam2|chr4 (40131627-40131487) |
|
177-296, gnl|dasNov1|scaffold_12920 (12698-12535) |
|
177-296, gnl|echTel1|scaffold_322816 (8064-7932) |
|
177-296, gnl|galGal2|chr13 (9400694-9400556) |
|
177-296, gnl|hg17|chr5 (175748007-175748148) |
|
177-296, gnl|Hg17|chr5 (175748180-175748059) |
|
177-296, gnl|mm7|chr13 (53674100-53674235) |
|
177-296, gnl|Mm7|chr13 (53674272-53674146) |
|
177-296, gnl|monDom2|scaffold_6 (18856364-18856223) |
|
177-296, gnl|oryCun1|scaffold_201790 (52305-52212) |
|
177-296, gnl|panTro1|chr4 (183199366-183199507) |
|
177-296, gnl|rheMac2|chr6 (172860283-172860424) |
|
177-296, gnl|rn3|chr17 (16085153-16085018) |
| |
|
304-416, gnl|bosTau2|chr7 (25984169-25984057) |
|
304-416, gnl|Hg17|chr5 (175747951-175747839) |
|
304-416, gnl|Mm7|chr13 (53674038-53673926) |
| |
|
589-1020, gnl|bosTau2|chr7 (25980086-25979667) |
|
589-1020, gnl|Hg17|chr5 (175743983-175743571) |
