Non-Coding RNA Search

Ss1.1-Pig4-TMW8027N05.3

Sequence:


               
               CACAACATAACTACTCGGCGTTGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ATCAGGCATTTACTGGGTGCTGTCTCTGCCTGAGCT
TGTGCCAGATTCTCGTGAACAAATTAGCATCCGTGTCGTAAAGAAGCTCTCTGTGTGCTT
TCAACAGGAAGGATGTAACACCGGGAGTCAGGTGTGGTACTTACAATGTCGTGGGAAGGG
CTAGAGGAGCAGACAATAGACAAGACCTACAAGAATAATATACCTGCCAGAGCAGAACTG
ACCCACCAAGGGAGCTGCCACCTCTGAGGCCACGTCTCGCTCCACTGAATTCAAGAACAT
ACAGTTATGGCTGCAGCGAAAAACTCAAAAACCTCATCCTCCATCAGAAGAACCTTTTGC
TGCTCAGAGGTCTGGAGAACTGGCATAGGCACCCTGCTGAAGCAAAGACCCTTGTCTCAT
GGCCTTGCCTGTGTGAGCACTAGTCAAAAGGGGCAGAAAGGAGGCGGCCACCCCATTTCC
ACCTCCCAGAACTTCCTGAGTGCAAGATTGGCAGAACCCATTTATATCTAGAACCTGAGC
TGCAGAGGTGTCTGGGGAATGGAGGATTGAATTTTCTTGCTTCTGAAGCTCCCCAGAATG
TTAACATACAAGCCGTGGAAACCAAAATATCCTTAACCTCAGGAGACAAGGGCAGAGGCA
GGTTACAAAAAGGTAGTCAGGATGCTGAAGTCACATAGACCAGAGTTTGAATTACACTGG
TGAGCTGTGTGACCTGGAGCAAGAAACGTCCCCTCTCTGAACTTGACTAGCCCACCCTGT
GAAGTGAGCTCATCAAAGAACGTGGATAGTTAGGAGGATCTTGTACAATCGTCACATAGG
ATCTGACTCAGGAAACACTCAATGAATGAGAGCAAGTGCTGTTGTTGAAATGAACCCACA
TTTTAAGAAACTAGAAAAAGAACAGCAAATATATCCCCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAACATAACTACTCGGCGTTGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ATCAGGCATTTACTGGGTGCTGTCTCTGCCTGAGCT
TGTGCCAGATTCTCGTGAACAAATTAGCATCCGTGTCGTAAAGAAGCTCTCTGTGTGCTT
TCAACAGGAAGGATGTAACACCGGGAGTCAGGTGTGGTACTTACAATGTCGTGGGAAGGG
CTAGAGGAGCAGACAATAGACAAGACCTACAAGAATAATATACCTGCCAGAGCAGAACTG
ACCCACCAAGGGAGCTGCCACCTCTGAGGCCACGTCTCGCTCCACTGAATTCAAGAACAT
ACAGTTATGGCTGCAGCGAAAAACTCAAAAACCTCATCCTCCATCAGAAGAACCTTTTGC
TGCTCAGAGGTCTGGAGAACTGGCATAGGCACCCTGCTGAAGCAAAGACCCTTGTCTCAT
GGCCTTGCCTGTGTGAGCACTAGTCAAAAGGGGCAGAAAGGAGGCGGCCACCCCATTTCC
ACCTCCCAGAACTTCCTGAGTGCAAGATTGGCAGAACCCATTTATATCTAGAACCTGAGC
TGCAGAGGTGTCTGGGGAATGGAGGATTGAATTTTCTTGCTTCTGAAGCTCCCCAGAATG
TTAACATACAAGCCGTGGAAACCAAAATATCCTTAACCTCAGGAGACAAGGGCAGAGGCA
GGTTACAAAAAGGTAGTCAGGATGCTGAAGTCACATAGACCAGAGTTTGAATTACACTGG
TGAGCTGTGTGACCTGGAGCAAGAAACGTCCCCTCTCTGAACTTGACTAGCCCACCCTGT
GAAGTGAGCTCATCAAAGAACGTGGATAGTTAGGAGGATCTTGTACAATCGTCACATAGG
ATCTGACTCAGGAAACACTCAATGAATGAGAGCAAGTGCTGTTGTTGAAATGAACCCACA
TTTTAAGAAACTAGAAAAAGAACAGCAAATATATCCCCCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               551-670, - strand, RNAz p=0.822346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               551-670, - strand, RNAz p=0.822346

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               38-948, gnl|bosTau2|chr18 (38623306-38622397)
               

               
               38-948, gnl|Hg17|chr19 (50482901-50487683)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-948, gnl|bosTau2|chr18 (38623306-38622397)
               

               
               38-948, gnl|Hg17|chr19 (50482901-50487683)

	38-948, gnl\|bosTau2\|chr18 (38623306-38622397)
	38-948, gnl\|Hg17\|chr19 (50482901-50487683)