Non-Coding RNA Search

Ss1.1-Pig4-TMW8027N08.3

Sequence:


               
               TCTGGTCACCTTCCCACAGAAGCCATTGAAAAACCAGCGGCAGTCCCAGTCAGCTTTGAA
TTCAGTGATGCCAAAGATGAGAGTGATAGGGCTTCCATAAGCCCCATGGATGAACCTGTG
CCTGACTCAGAGTCTCCTATTGAGAAAGTTTTGTCTCCTTTACGGAGCCCACCGCTAATT
GGATCCGAGTCTGCATATGAAAGTTTTCTAAGTGCCGACGACAAGGCTCCTGGTAGATAC
ACAGAAAGCCCCTTTGAGGGAAAGAATGGAAAACAAGGCTCTCCAGACCAAATAAGTCCA
GTTTCCGACACGACTTCCACTGGTCTTTTCCAAGACAAAGAGGAAGGGAAAAGCACAGAC
TTTATACCAATAAAGGAAGATTTTGATCAAGAAAAGAAAACTGACGATGTTGAGGAGCTG
AGTTCTCAGTCAGGACTGGCTCTGGATGAAAGGAAGTTAGGAGATGTTTCTCCTACACAG
ATAGATGTCAGTCAGTTTGGATCTTTTAAGGAAGACACTAAGATGTCCATTTCTGAAGGC
ACTGTCTCAGACAAGTCAGCTACCCCTGTTGACGAGGGTGTGGCAGAAGACACATACTCT
CACATGGAGGGAGTGGCCTCGGTCTCCACAGCTTCTGTGGCTACGAGCTCATTTCCAGAG
CCAACAACAGATGACGTGTCCCCCTCGCTGCATGCGGAGGTCGGTTCCCCACATTCCACC
GAAGTAGACGACTCCCTTTCAGTGTCTGTCGTGCAAACGCCCACCACTTTCCAGGAAACA
GAAATGTCTCCATCTAAAGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGTCACCTTCCCACAGAAGCCATTGAAAAACCAGCGGCAGTCCCAGTCAGCTTTGAA
TTCAGTGATGCCAAAGATGAGAGTGATAGGGCTTCCATAAGCCCCATGGATGAACCTGTG
CCTGACTCAGAGTCTCCTATTGAGAAAGTTTTGTCTCCTTTACGGAGCCCACCGCTAATT
GGATCCGAGTCTGCATATGAAAGTTTTCTAAGTGCCGACGACAAGGCTCCTGGTAGATAC
ACAGAAAGCCCCTTTGAGGGAAAGAATGGAAAACAAGGCTCTCCAGACCAAATAAGTCCA
GTTTCCGACACGACTTCCACTGGTCTTTTCCAAGACAAAGAGGAAGGGAAAAGCACAGAC
TTTATACCAATAAAGGAAGATTTTGATCAAGAAAAGAAAACTGACGATGTTGAGGAGCTG
AGTTCTCAGTCAGGACTGGCTCTGGATGAAAGGAAGTTAGGAGATGTTTCTCCTACACAG
ATAGATGTCAGTCAGTTTGGATCTTTTAAGGAAGACACTAAGATGTCCATTTCTGAAGGC
ACTGTCTCAGACAAGTCAGCTACCCCTGTTGACGAGGGTGTGGCAGAAGACACATACTCT
CACATGGAGGGAGTGGCCTCGGTCTCCACAGCTTCTGTGGCTACGAGCTCATTTCCAGAG
CCAACAACAGATGACGTGTCCCCCTCGCTGCATGCGGAGGTCGGTTCCCCACATTCCACC
GAAGTAGACGACTCCCTTTCAGTGTCTGTCGTGCAAACGCCCACCACTTTCCAGGAAACA
GAAATGTCTCCATCTAAAGAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|460549|gb|AAB29393.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|460549|gb|AAB29393.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-399, - strand, RNAz p=0.901025
               

               
               477-796, - strand, RNAz p=0.907502

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.901025
               

               
               477-796, - strand, RNAz p=0.907502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr20 (6406931-6407737)
               

               
               1-804, gnl|Hg17|chr5 (71528971-71529774)
               

               
               1-804, gnl|Mm7|chr13 (96501991-96501185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr20 (6406931-6407737)
               

               
               1-804, gnl|Hg17|chr5 (71528971-71529774)
               

               
               1-804, gnl|Mm7|chr13 (96501991-96501185)

	280-399, - strand, RNAz p=0.901025
	477-796, - strand, RNAz p=0.907502

	1-804, gnl\|bosTau2\|chr20 (6406931-6407737)
	1-804, gnl\|Hg17\|chr5 (71528971-71529774)
	1-804, gnl\|Mm7\|chr13 (96501991-96501185)