Non-Coding RNA Search

Ss1.1-Pig4-TMW8027O03.3

Sequence:


               
               TTTTTGGGAGGGACTTACATTTTAATAATTTAATTGAATTACAAAGATTGACTAAGTGGT
TTGAAACAGCCATTTAAAGTTTAGAGACAGACATAATACATTAGGGGGACAAAGAAATCT
GTCCTATAAATAGCCTAGAAAAATCTTTTGCGAAACAAACCTTTTCAATGGGGAGAAGCA
AACTCAGAACACAGGAACAATATGCTGCTGTTAGAATTGGTATTTTCAGAGTATGCAACA
ATACGGGAAAAATATTTGCATTAATACTATGCAAAATGAAAAAAAGGAATACTTTGTATG
TCAGAAAAACTCTACACTGTAGAAAAACACACTAAAGTTTTAGGGAGTATGTCAGCGTAA
GGCCACTGACTTTTCATCGCTCCTCGCCACTAAGCGTAACAATGCTGCCCCAAACTGCTT
TTCCTATTGTATTTTACAACTACTCATTGTTTAGTATTTGACCCACTGAAAACTACATCT
CCCACCCTTGCTCCTGAAAGGAGTCCTGAGAATATCACTGGTACCAAAATAAGGTAGGCA
ACAATTTTTAGCCCATTCATACACCTGCCTGTGAGGTTCTGGGATACCAGTCCCAAACGA
CATGGGTTTAGGCAGATCAGACAGGCCAAGTTTTTATTTCCTTTCTGTGTCATAAAATTT
TAAGAAAAGAAGAGAAGGCAATTGATGCTTTAGGGCTAGGCAGTCTGGTGAAATAATTCT
TGACAAAACCTAGTATTTTCCTAAGCCCCTGCAACAATAGTTTCTCGGAGTAAAATGTCA
GCATTTGTCAAGCCCTTTCAGGAAGCTGCTGATAACCTTCAGTGCTTAAGAGTCATGCTT
TGACGTGAGCCCAGCCTCTTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGGGAGGGACTTACATTTTAATAATTTAATTGAATTACAAAGATTGACTAAGTGGT
TTGAAACAGCCATTTAAAGTTTAGAGACAGACATAATACATTAGGGGGACAAAGAAATCT
GTCCTATAAATAGCCTAGAAAAATCTTTTGCGAAACAAACCTTTTCAATGGGGAGAAGCA
AACTCAGAACACAGGAACAATATGCTGCTGTTAGAATTGGTATTTTCAGAGTATGCAACA
ATACGGGAAAAATATTTGCATTAATACTATGCAAAATGAAAAAAAGGAATACTTTGTATG
TCAGAAAAACTCTACACTGTAGAAAAACACACTAAAGTTTTAGGGAGTATGTCAGCGTAA
GGCCACTGACTTTTCATCGCTCCTCGCCACTAAGCGTAACAATGCTGCCCCAAACTGCTT
TTCCTATTGTATTTTACAACTACTCATTGTTTAGTATTTGACCCACTGAAAACTACATCT
CCCACCCTTGCTCCTGAAAGGAGTCCTGAGAATATCACTGGTACCAAAATAAGGTAGGCA
ACAATTTTTAGCCCATTCATACACCTGCCTGTGAGGTTCTGGGATACCAGTCCCAAACGA
CATGGGTTTAGGCAGATCAGACAGGCCAAGTTTTTATTTCCTTTCTGTGTCATAAAATTT
TAAGAAAAGAAGAGAAGGCAATTGATGCTTTAGGGCTAGGCAGTCTGGTGAAATAATTCT
TGACAAAACCTAGTATTTTCCTAAGCCCCTGCAACAATAGTTTCTCGGAGTAAAATGTCA
GCATTTGTCAAGCCCTTTCAGGAAGCTGCTGATAACCTTCAGTGCTTAAGAGTCATGCTT
TGACGTGAGCCCAGCCTCTTATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               668-764, - strand, RNAz p=0.981971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-764, - strand, RNAz p=0.981971

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-327, gnl|bosTau2|chr13 (44018068-44017746)
               

               
               2-327, gnl|Hg17|chr20 (29860342-29859601)
               


               
               509-864, gnl|bosTau2|chr13 (44017237-44016891)
               

               
               509-864, gnl|Hg17|chr20 (29858902-29858566)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-327, gnl|bosTau2|chr13 (44018068-44017746)
               

               
               2-327, gnl|Hg17|chr20 (29860342-29859601)
               


               
               509-864, gnl|bosTau2|chr13 (44017237-44016891)
               

               
               509-864, gnl|Hg17|chr20 (29858902-29858566)

	2-327, gnl\|bosTau2\|chr13 (44018068-44017746)
	2-327, gnl\|Hg17\|chr20 (29860342-29859601)

	509-864, gnl\|bosTau2\|chr13 (44017237-44016891)
	509-864, gnl\|Hg17\|chr20 (29858902-29858566)