Non-Coding RNA Search

Ss1.1-Pig4-TMW8028A11.3

Sequence:


               
               CAGAGGGCCTGTGACTTAGGAGTCCTGTCCATGCTTCTGGGCGGTTTGAAGTTTTGAATG
TGGATGTGGGAGTCACCGTTACGCCTTCTCTCCTTTTCAGATCTTCAACTGCTCTGCTCC
AGACACAGGGAACATGGAGGTTTTGGTGCGGTATGGCACTGAGGAGCAGAAGGCCCGCTG
GCTGACTCCCTTGCTGGAGGGAAAGGCCCGCTCCTGTTTTGCTATGACTGAGCCCCAGGT
ACCTGGTTCCTGGGACTTGGGTCACTCACAGGTGCTGGAGGTTTTGGTGCGGTATGGCAC
TGAGGAGCAGAAGGCCCGCTGGCTGACTCCCTTGCTGGAGGGAAAGGCCCGCTCCTGTTT
TGCTATGACTGAGCCCCAGGTTGCCTCCTCAGATGCTACAAATATCGAGTCTTCCATCCG
AGAGGAGGATGGCTTCTATGTCATCAATGGTCACAAGTGGTGGATCTCAGGTATCTGCCT
GAAATTCATTTTTCGGTTATACTTACATGAGTCTGCATTTATAAGCATGTCTTCCCTGCC
CTGCTGGTGCCTGTGAAACGATGGGAGGGACCAGCTTCATTTCCACTTGACACAAAGGAG
ATTCTGAGTCTGCTTCCAGCAGAGGCAGCAAATCCTGGGAGAACGAGAGGTTCTTTGGGG
GTTACCAGGTGACCCCACATATGGCAGTTCCAGGAATCTCTCATTCCCTCCTGACTCTCT
TTGTTCTGCCCTGAGCATCTCCCTTTGGAGAGGCAGGTCCTGTCCTCAGTGGTGATCCTG
CTATAAGATCAGCTACAGCAGAAGGACCAGTGGTAATTCTGTCATTCACCAGCTGTTAAC
TTTGCAGAGACCTCACCTCACTGAGTCCCCACCCCTCCCTGGAAGATCCCTGCTATTATC
CCCACTTTACAGAGAAGGAGACTACGATGGAGAAGTGACTTGAGTCACTTGCCTAAGGTA
GTAGCCCCCTATTAAAAGTAAGGAATGCAGAGTTCAGGGCTGGCCTGATTCCGAAGCCTG
TGCCTAAAGCCATCATGTTCCCACTGCTTGTGATAAAGTAGCAGTTTTCAGCTTCTTGTA
TCCACATTAGATTTTCAGCTAGACTTGGTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGGCCTGTGACTTAGGAGTCCTGTCCATGCTTCTGGGCGGTTTGAAGTTTTGAATG
TGGATGTGGGAGTCACCGTTACGCCTTCTCTCCTTTTCAGATCTTCAACTGCTCTGCTCC
AGACACAGGGAACATGGAGGTTTTGGTGCGGTATGGCACTGAGGAGCAGAAGGCCCGCTG
GCTGACTCCCTTGCTGGAGGGAAAGGCCCGCTCCTGTTTTGCTATGACTGAGCCCCAGGT
ACCTGGTTCCTGGGACTTGGGTCACTCACAGGTGCTGGAGGTTTTGGTGCGGTATGGCAC
TGAGGAGCAGAAGGCCCGCTGGCTGACTCCCTTGCTGGAGGGAAAGGCCCGCTCCTGTTT
TGCTATGACTGAGCCCCAGGTTGCCTCCTCAGATGCTACAAATATCGAGTCTTCCATCCG
AGAGGAGGATGGCTTCTATGTCATCAATGGTCACAAGTGGTGGATCTCAGGTATCTGCCT
GAAATTCATTTTTCGGTTATACTTACATGAGTCTGCATTTATAAGCATGTCTTCCCTGCC
CTGCTGGTGCCTGTGAAACGATGGGAGGGACCAGCTTCATTTCCACTTGACACAAAGGAG
ATTCTGAGTCTGCTTCCAGCAGAGGCAGCAAATCCTGGGAGAACGAGAGGTTCTTTGGGG
GTTACCAGGTGACCCCACATATGGCAGTTCCAGGAATCTCTCATTCCCTCCTGACTCTCT
TTGTTCTGCCCTGAGCATCTCCCTTTGGAGAGGCAGGTCCTGTCCTCAGTGGTGATCCTG
CTATAAGATCAGCTACAGCAGAAGGACCAGTGGTAATTCTGTCATTCACCAGCTGTTAAC
TTTGCAGAGACCTCACCTCACTGAGTCCCCACCCCTCCCTGGAAGATCCCTGCTATTATC
CCCACTTTACAGAGAAGGAGACTACGATGGAGAAGTGACTTGAGTCACTTGCCTAAGGTA
GTAGCCCCCTATTAAAAGTAAGGAATGCAGAGTTCAGGGCTGGCCTGATTCCGAAGCCTG
TGCCTAAAGCCATCATGTTCCCACTGCTTGTGATAAAGTAGCAGTTTTCAGCTTCTTGTA
TCCACATTAGATTTTCAGCTAGACTTGGTGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               391-509, - strand, RNAz p=0.698161

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-509, - strand, RNAz p=0.698161

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-854, gnl|bosTau2|chr17 (30931606-30930772)
               

               
               1-854, gnl|Hg17|chr12 (110647385-110648323)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-854, gnl|bosTau2|chr17 (30931606-30930772)
               

               
               1-854, gnl|Hg17|chr12 (110647385-110648323)

	1-854, gnl\|bosTau2\|chr17 (30931606-30930772)
	1-854, gnl\|Hg17\|chr12 (110647385-110648323)