Non-Coding RNA Search

Ss1.1-Pig4-TMW8028D07.5

Sequence:


               
               GTTGCGGAGGGAACTCTTCCCATCCTTTGCCGCCCAGGTTACTGCTGGTGTCCTTCGATG
GCTTCAGAGCTGACTACCTACAGAACTACGAATTTCCTCATCTCCAGAACTTTATCAAAG
ACGGCGTCTTGGTCAAGCAGGTTCAGAACGTTTTCATCACCAAAACATTTCCCAACCACT
ACAGCATCGTGACAGGCCTGTATGAAGAAAGCCACGGCATTGTGGCCAATTCCATGTATG
ATGTCATCGCAAAGAAACACTTCTCCGACACGAACGACAAAGATCCTTTTTGGTGGAATG
AGGCAGTGCCTATCTGGGTGACCAATCAGCTTCAGGGCAACAGATCCAGCGCAGCTGCCA
TGTGGCCTGGCACAGACGTCCCCATTCACAACACCACGCCATCCTACTTCATGGATTACA
GCCCCGCCGTGTCCTTTGGGGAGCGGCTGGGTAACCTCACCACGTGGCTGAGCAGTTCGA
ACCCACCGGTCACCTTTGCGACGCTCTATTGGGAAGAACCAGACGCAAGTGGCCACAAAT
ACGGCCCCGCAGATAAAGACAACATGCGCAGGGTGTTGAAAGAAGTAGATGACCATGTCG
GTGAGCTCGTTCACCAGCTCAAGGTGTTAGGACTGTGGGAAACTCTTAACGTGATCATTA
CAAGTGATCATGGGATGACCCAGTGCTCTAAGGACAGACTGATAAACTTGGATCACTGCA
TCGACCCGGCAGACTACACTCTTGTAGACTTGACCCCAGTGGCTGCCATACTCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCGGAGGGAACTCTTCCCATCCTTTGCCGCCCAGGTTACTGCTGGTGTCCTTCGATG
GCTTCAGAGCTGACTACCTACAGAACTACGAATTTCCTCATCTCCAGAACTTTATCAAAG
ACGGCGTCTTGGTCAAGCAGGTTCAGAACGTTTTCATCACCAAAACATTTCCCAACCACT
ACAGCATCGTGACAGGCCTGTATGAAGAAAGCCACGGCATTGTGGCCAATTCCATGTATG
ATGTCATCGCAAAGAAACACTTCTCCGACACGAACGACAAAGATCCTTTTTGGTGGAATG
AGGCAGTGCCTATCTGGGTGACCAATCAGCTTCAGGGCAACAGATCCAGCGCAGCTGCCA
TGTGGCCTGGCACAGACGTCCCCATTCACAACACCACGCCATCCTACTTCATGGATTACA
GCCCCGCCGTGTCCTTTGGGGAGCGGCTGGGTAACCTCACCACGTGGCTGAGCAGTTCGA
ACCCACCGGTCACCTTTGCGACGCTCTATTGGGAAGAACCAGACGCAAGTGGCCACAAAT
ACGGCCCCGCAGATAAAGACAACATGCGCAGGGTGTTGAAAGAAGTAGATGACCATGTCG
GTGAGCTCGTTCACCAGCTCAAGGTGTTAGGACTGTGGGAAACTCTTAACGTGATCATTA
CAAGTGATCATGGGATGACCCAGTGCTCTAAGGACAGACTGATAAACTTGGATCACTGCA
TCGACCCGGCAGACTACACTCTTGTAGACTTGACCCCAGTGGCTGCCATACTCCCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57530236|ref|NP_001006422.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57530236|ref|NP_001006422.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-719, + strand, RNAz p=0.56509

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-719, + strand, RNAz p=0.56509

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr23 (18442028-18441249)
               

               
               1-780, gnl|Hg17|chr6 (46215323-46216102)
               

               
               1-780, gnl|Mm7|chr17 (42225228-42224449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr23 (18442028-18441249)
               

               
               1-780, gnl|Hg17|chr6 (46215323-46216102)
               

               
               1-780, gnl|Mm7|chr17 (42225228-42224449)

	1-780, gnl\|bosTau2\|chr23 (18442028-18441249)
	1-780, gnl\|Hg17\|chr6 (46215323-46216102)
	1-780, gnl\|Mm7\|chr17 (42225228-42224449)