Non-Coding RNA Search

Ss1.1-Pig4-TMW8028I01.5

Sequence:


               
               CCATGTTGGTTTCTACCTAGTAATTTATGCTTTTCTTGGTGTTTGCAAATCGATTGCTAT
TATGGGATGCAGACGAATCTGGGCCTGGATCCAGTAGGTTGGGGGATTATTGGAGTGGGT
CTGTGTGCACGCACATGAAATCCTGGAAAAATGGACTCTTGTTTCTGTGTATTTTACTCA
TTGAATAAAAACATTTTCAGGTTTTTTTTTTTTAAGCATGTTTAATTACACTCATATTGC
ATTTTTAGGGAATGTATCTGCTTTATTTCATATTGTTCTTGATAGGAGCAACCTTCAAAC
CACCTTCATTGGCTTTGTCACCAGACCTTTTATTTCAAAAAAGCCTTGCCCTACCCCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGTTGGTTTCTACCTAGTAATTTATGCTTTTCTTGGTGTTTGCAAATCGATTGCTAT
TATGGGATGCAGACGAATCTGGGCCTGGATCCAGTAGGTTGGGGGATTATTGGAGTGGGT
CTGTGTGCACGCACATGAAATCCTGGAAAAATGGACTCTTGTTTCTGTGTATTTTACTCA
TTGAATAAAAACATTTTCAGGTTTTTTTTTTTTAAGCATGTTTAATTACACTCATATTGC
ATTTTTAGGGAATGTATCTGCTTTATTTCATATTGTTCTTGATAGGAGCAACCTTCAAAC
CACCTTCATTGGCTTTGTCACCAGACCTTTTATTTCAAAAAAGCCTTGCCCTACCCCGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-151, + strand, RNAz p=0.833996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-151, + strand, RNAz p=0.833996

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-357, gnl|bosTau2|chr6 (66756999-66756644)
               

               
               1-357, gnl|canFam2|chr11 (37701150-37701482)
               

               
               1-357, gnl|dasNov1|scaffold_525 (3578-3228)
               

               
               1-357, gnl|echTel1|scaffold_122453 (131-502)
               

               
               1-357, gnl|hg17|chr9 (14169989-14170336)
               

               
               1-357, gnl|Hg17|chr9 (14170378-14170012)
               

               
               1-357, gnl|loxAfr1|scaffold_527 (73687-73338)
               

               
               1-357, gnl|mm7|chr4 (81787594-81787943)
               

               
               1-357, gnl|Mm7|chr4 (81787986-81787617)
               

               
               1-357, gnl|monDom2|scaffold_5 (100237503-100237162)
               

               
               1-357, gnl|oryCun1|scaffold_212981 (30253-30600)
               

               
               1-357, gnl|panTro1|chr11 (14372404-14372751)
               

               
               1-357, gnl|rheMac2|chr15 (62755488-62755141)
               

               
               1-357, gnl|rn3|chr5 (101283251-101283599)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-357, gnl|bosTau2|chr6 (66756999-66756644)
               

               
               1-357, gnl|canFam2|chr11 (37701150-37701482)
               

               
               1-357, gnl|dasNov1|scaffold_525 (3578-3228)
               

               
               1-357, gnl|echTel1|scaffold_122453 (131-502)
               

               
               1-357, gnl|hg17|chr9 (14169989-14170336)
               

               
               1-357, gnl|Hg17|chr9 (14170378-14170012)
               

               
               1-357, gnl|loxAfr1|scaffold_527 (73687-73338)
               

               
               1-357, gnl|mm7|chr4 (81787594-81787943)
               

               
               1-357, gnl|Mm7|chr4 (81787986-81787617)
               

               
               1-357, gnl|monDom2|scaffold_5 (100237503-100237162)
               

               
               1-357, gnl|oryCun1|scaffold_212981 (30253-30600)
               

               
               1-357, gnl|panTro1|chr11 (14372404-14372751)
               

               
               1-357, gnl|rheMac2|chr15 (62755488-62755141)
               

               
               1-357, gnl|rn3|chr5 (101283251-101283599)

	1-357, gnl\|bosTau2\|chr6 (66756999-66756644)
	1-357, gnl\|canFam2\|chr11 (37701150-37701482)
	1-357, gnl\|dasNov1\|scaffold_525 (3578-3228)
	1-357, gnl\|echTel1\|scaffold_122453 (131-502)
	1-357, gnl\|hg17\|chr9 (14169989-14170336)
	1-357, gnl\|Hg17\|chr9 (14170378-14170012)
	1-357, gnl\|loxAfr1\|scaffold_527 (73687-73338)
	1-357, gnl\|mm7\|chr4 (81787594-81787943)
	1-357, gnl\|Mm7\|chr4 (81787986-81787617)
	1-357, gnl\|monDom2\|scaffold_5 (100237503-100237162)
	1-357, gnl\|oryCun1\|scaffold_212981 (30253-30600)
	1-357, gnl\|panTro1\|chr11 (14372404-14372751)
	1-357, gnl\|rheMac2\|chr15 (62755488-62755141)
	1-357, gnl\|rn3\|chr5 (101283251-101283599)