Ss1.1-Pig4-TMW8028I04.3
|
AGAGAATTGGTCTCGTTTAAACACACGCCGAACCTCACCATATGGAGCCAGACATTGGGA
CGCACGCATGTGATTGTGTGCACGCATGTGTGTGTGTGCACGCACCGGGCTGGGCCAAGC
GACTGAGGACTCGCTTGGGAACGGGCAGGTGGTAGTAGGGGCGCCAGCTTGGGCTCTCCT
GGCGCCCCGTAGCATCGAGTGTCTTCTTTGTCTTCTTTCTCTCCTCACCCAAATCCCTTT
GCCTCTCCCCAAACCGGGCCGCCAGGATCCCTCCCCGCAGCGGCGATGGCCCGAGCCATG
AGAGTGAGGACTTTCCGCGCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAGCGCC
CCTGGTGGACAGGATGGTTCGGCAAAGCAGCCTGAGTTATTTTTGTGGACGGAATCGGAA
CACGCTGGCTCCATATTGTGAATTTTTTATTAATTTTTTCTTTTTCCTTTGTTATCTCCT
TATCTCTTCCTTTCTTCAGACTCCGTCCAAGGAGATGCTCTCCCCGGTCTTCTGCTGCAA
TTAGATTCCTTTCCCTTTTCTCATTTCTCGTTCTTCTCTTTCTAAGGAGAGAGGAGCAAA
TGGTTTCCCGGCAAAGACCTTTGGCCATCCATGTTGGGCTGGTAGGGTGAGGGGTGTTCC
TTTGCTTCTGAGATGTTCAAGGTGCTGTAGTTGCGGGGAGATAGTTCTTTCATCTCTGCT
CCCCTAGTAGAGTAGTGGGTTAATCCCCAGGTCCAGGGTCCGTATCCATCCTGGCACCCT
GAGCCACCTTGGGCCTGTCTGCCAGCCCGGAGAGCCCTTTCCACGTTCCCTGAGCATCTG
AGCTGCCTCAGATTCCATTTGTTCCTCTCCTTCCTGGAAGGTCTCCTTTTAAAATTTATT
TTAATCCCAAACGTCTGAATGTTTTGCAGTGTCGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAGAATTGGTCTCGTTTAAACACACGCCGAACCTCACCATATGGAGCCAGACATTGGGA
CGCACGCATGTGATTGTGTGCACGCATGTGTGTGTGTGCACGCACCGGGCTGGGCCAAGC
GACTGAGGACTCGCTTGGGAACGGGCAGGTGGTAGTAGGGGCGCCAGCTTGGGCTCTCCT
GGCGCCCCGTAGCATCGAGTGTCTTCTTTGTCTTCTTTCTCTCCTCACCCAAATCCCTTT
GCCTCTCCCCAAACCGGGCCGCCAGGATCCCTCCCCGCAGCGGCGATGGCCCGAGCCATG
AGAGTGAGGACTTTCCGCGCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAGCGCC
CCTGGTGGACAGGATGGTTCGGCAAAGCAGCCTGAGTTATTTTTGTGGACGGAATCGGAA
CACGCTGGCTCCATATTGTGAATTTTTTATTAATTTTTTCTTTTTCCTTTGTTATCTCCT
TATCTCTTCCTTTCTTCAGACTCCGTCCAAGGAGATGCTCTCCCCGGTCTTCTGCTGCAA
TTAGATTCCTTTCCCTTTTCTCATTTCTCGTTCTTCTCTTTCTAAGGAGAGAGGAGCAAA
TGGTTTCCCGGCAAAGACCTTTGGCCATCCATGTTGGGCTGGTAGGGTGAGGGGTGTTCC
TTTGCTTCTGAGATGTTCAAGGTGCTGTAGTTGCGGGGAGATAGTTCTTTCATCTCTGCT
CCCCTAGTAGAGTAGTGGGTTAATCCCCAGGTCCAGGGTCCGTATCCATCCTGGCACCCT
GAGCCACCTTGGGCCTGTCTGCCAGCCCGGAGAGCCCTTTCCACGTTCCCTGAGCATCTG
AGCTGCCTCAGATTCCATTTGTTCCTCTCCTTCCTGGAAGGTCTCCTTTTAAAATTTATT
TTAATCCCAAACGTCTGAATGTTTTGCAGTGTCGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
466-441, BP439412 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP439412.1|), blast E-value=0.00000000000001, identity=100% |
|
467-575, CR454383 Normalized and Subtracted bovine embryonic and
(emb|CR454383.2|), blast E-value=7.9874e-44, identity=96.33% |
|
467-441, LB00487.CR_O13 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT849669.1|),
blast E-value=0.000000000003, identity=97.73% |
|
467-441, 010127BEMN062836HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY070135.1|), blast E-value=0.000000000003, identity=97.73% |
|
467-441, 001003BEMN034382HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY083762.1|), blast E-value=0.000000000003, identity=97.73% |
|
467-441, 010127BEMN061812HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY189037.1|), blast E-value=0.000000000003, identity=97.73% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
466-441, BP439412 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP439412.1|), blast E-value=0.00000000000001, identity=100% |
|
467-575, CR454383 Normalized and Subtracted bovine embryonic and
(emb|CR454383.2|), blast E-value=7.9874e-44, identity=96.33% |
|
467-441, LB00487.CR_O13 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT849669.1|),
blast E-value=0.000000000003, identity=97.73% |
|
467-441, 010127BEMN062836HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY070135.1|), blast E-value=0.000000000003, identity=97.73% |
|
467-441, 001003BEMN034382HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY083762.1|), blast E-value=0.000000000003, identity=97.73% |
|
467-441, 010127BEMN061812HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY189037.1|), blast E-value=0.000000000003, identity=97.73% |
|
1-692, gnl|bosTau2|chr29 (33915245-33914560) |
|
1-692, gnl|Hg17|chr11 (64289831-64289165) |
|
1-692, gnl|Mm7|chr19 (6270631-6271307) |
| |
|
782-932, gnl|bosTau2|chr29 (33914416-33914274) |
|
782-932, gnl|canFam2|chr18 (55418394-55417768) |
|
782-932, gnl|dasNov1|scaffold_12601 (12776-13393) |
|
782-932, gnl|echTel1|scaffold_323783 (42072-41546) |
|
782-932, gnl|hg17|chr11 (64288841-64289464) |
|
782-932, gnl|Hg17|chr11 (64289011-64288863) |
|
782-932, gnl|mm7|chr19 (6271612-6270994) |
|
782-932, gnl|Mm7|chr19 (6271448-6271586) |
|
782-932, gnl|monDom2|scaffold_482 (30958-30454) |
|
782-932, gnl|oryCun1|scaffold_161411 (2238-2794) |
|
782-932, gnl|panTro1|chr9 (65506785-65507407) |
|
782-932, gnl|rheMac2|chr14 (9692089-9691453) |
|
782-932, gnl|rn3|chr1 (209317841-209317225) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-692, gnl|bosTau2|chr29 (33915245-33914560) |
|
1-692, gnl|Hg17|chr11 (64289831-64289165) |
|
1-692, gnl|Mm7|chr19 (6270631-6271307) |
| |
|
782-932, gnl|bosTau2|chr29 (33914416-33914274) |
|
782-932, gnl|canFam2|chr18 (55418394-55417768) |
|
782-932, gnl|dasNov1|scaffold_12601 (12776-13393) |
|
782-932, gnl|echTel1|scaffold_323783 (42072-41546) |
|
782-932, gnl|hg17|chr11 (64288841-64289464) |
|
782-932, gnl|Hg17|chr11 (64289011-64288863) |
|
782-932, gnl|mm7|chr19 (6271612-6270994) |
|
782-932, gnl|Mm7|chr19 (6271448-6271586) |
|
782-932, gnl|monDom2|scaffold_482 (30958-30454) |
|
782-932, gnl|oryCun1|scaffold_161411 (2238-2794) |
|
782-932, gnl|panTro1|chr9 (65506785-65507407) |
|
782-932, gnl|rheMac2|chr14 (9692089-9691453) |
|
782-932, gnl|rn3|chr1 (209317841-209317225) |
