Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J08.5

Sequence:


               
               CTGCAGCTTGTGGCAATGCTGGATCCTTAACCCCCTGAGTGAGGCTAGGGAGTGAACCTG
CATCCTCAGGTTCTTAACCCCCTGAGCCACAATGGGATCTCCTGTGTCTGACTCTCAATA
CAGATCTCCATATGCCGCAGAATCGGCCCAAGAAATGGCAAAAAGACAAAAAAAATAAAT
AAATATAAGTAAGTAAATAAATAAAACCCAAGAGCTAAAACTCAAGAGTGCTGATGTGTG
TCTTAATCAGATGAGACAAGATGCTATCCCAGAGAGCACCTGGGAACTGCATTTTGTTTA
GCAGAATCTGCCTTTCCTCCGGCTTCCATCCAGGGCAGGCACCCGAGCAGGGAAGAGAGG
GCGCTGGAGGCAAGGAAGACCCGGTGACTTGTGGGTTTTCTTGCCCCTGGGTTGGGCAAT
TTGGATCAAATGGTCTCTACAACAATTTGGATCACAAGTCTCTACAACCAGTTTTTTTCC
AACTCGAAAGCCCTTTGAACCTTTTCTTCAAAGGAGTTACCTAGTTGTTTATTCAAAGGC
TAATTATAGCTATTATCATTGTCTCTTAAGAGTTTCTCTTTCTTTAGAAATAATTTGATT
TAAAGAAATTTACTTAAGCCGTGTAAGCCATCTTTCAAGTTAACTGGAATTAACTGGAAT
AAGATTTGATCTAATCAGGATTCCCTCCTGCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGCTTGTGGCAATGCTGGATCCTTAACCCCCTGAGTGAGGCTAGGGAGTGAACCTG
CATCCTCAGGTTCTTAACCCCCTGAGCCACAATGGGATCTCCTGTGTCTGACTCTCAATA
CAGATCTCCATATGCCGCAGAATCGGCCCAAGAAATGGCAAAAAGACAAAAAAAATAAAT
AAATATAAGTAAGTAAATAAATAAAACCCAAGAGCTAAAACTCAAGAGTGCTGATGTGTG
TCTTAATCAGATGAGACAAGATGCTATCCCAGAGAGCACCTGGGAACTGCATTTTGTTTA
GCAGAATCTGCCTTTCCTCCGGCTTCCATCCAGGGCAGGCACCCGAGCAGGGAAGAGAGG
GCGCTGGAGGCAAGGAAGACCCGGTGACTTGTGGGTTTTCTTGCCCCTGGGTTGGGCAAT
TTGGATCAAATGGTCTCTACAACAATTTGGATCACAAGTCTCTACAACCAGTTTTTTTCC
AACTCGAAAGCCCTTTGAACCTTTTCTTCAAAGGAGTTACCTAGTTGTTTATTCAAAGGC
TAATTATAGCTATTATCATTGTCTCTTAAGAGTTTCTCTTTCTTTAGAAATAATTTGATT
TAAAGAAATTTACTTAAGCCGTGTAAGCCATCTTTCAAGTTAACTGGAATTAACTGGAAT
AAGATTTGATCTAATCAGGATTCCCTCCTGCCCCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               257-441, + strand, RNAz p=0.976883
               

               
               475-591, - strand, RNAz p=0.719266

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-441, + strand, RNAz p=0.976883
               

               
               475-591, - strand, RNAz p=0.719266

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               218-441, gnl|bosTau2|chr1 (3111459-3111678)
               

               
               218-441, gnl|Hg17|chr21 (32237023-32237211)
               


               
               443-688, gnl|bosTau2|chr1 (3111655-3111898)
               

               
               443-688, gnl|canFam2|chr31 (29802810-29803047)
               

               
               443-688, gnl|echTel1|scaffold_310992 (442-686)
               

               
               443-688, gnl|hg17|chr21 (32237119-32237351)
               

               
               443-688, gnl|Hg17|chr21 (32237186-32237428)
               

               
               443-688, gnl|loxAfr1|scaffold_17878 (12354-12086)
               

               
               443-688, gnl|mm7|chr16 (90500985-90501208)
               

               
               443-688, gnl|Mm7|chr16 (90501044-90501281)
               

               
               443-688, gnl|oryCun1|scaffold_202646 (39517-39295)
               

               
               443-688, gnl|panTro1|chr22 (32208278-32208512)
               

               
               443-688, gnl|rheMac2|chr3 (14569619-14569386)
               

               
               443-688, gnl|rn3|chr11 (29556268-29556045)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-441, gnl|bosTau2|chr1 (3111459-3111678)
               

               
               218-441, gnl|Hg17|chr21 (32237023-32237211)
               


               
               443-688, gnl|bosTau2|chr1 (3111655-3111898)
               

               
               443-688, gnl|canFam2|chr31 (29802810-29803047)
               

               
               443-688, gnl|echTel1|scaffold_310992 (442-686)
               

               
               443-688, gnl|hg17|chr21 (32237119-32237351)
               

               
               443-688, gnl|Hg17|chr21 (32237186-32237428)
               

               
               443-688, gnl|loxAfr1|scaffold_17878 (12354-12086)
               

               
               443-688, gnl|mm7|chr16 (90500985-90501208)
               

               
               443-688, gnl|Mm7|chr16 (90501044-90501281)
               

               
               443-688, gnl|oryCun1|scaffold_202646 (39517-39295)
               

               
               443-688, gnl|panTro1|chr22 (32208278-32208512)
               

               
               443-688, gnl|rheMac2|chr3 (14569619-14569386)
               

               
               443-688, gnl|rn3|chr11 (29556268-29556045)

	257-441, + strand, RNAz p=0.976883
	475-591, - strand, RNAz p=0.719266

	218-441, gnl\|bosTau2\|chr1 (3111459-3111678)
	218-441, gnl\|Hg17\|chr21 (32237023-32237211)

	443-688, gnl\|bosTau2\|chr1 (3111655-3111898)
	443-688, gnl\|canFam2\|chr31 (29802810-29803047)
	443-688, gnl\|echTel1\|scaffold_310992 (442-686)
	443-688, gnl\|hg17\|chr21 (32237119-32237351)
	443-688, gnl\|Hg17\|chr21 (32237186-32237428)
	443-688, gnl\|loxAfr1\|scaffold_17878 (12354-12086)
	443-688, gnl\|mm7\|chr16 (90500985-90501208)
	443-688, gnl\|Mm7\|chr16 (90501044-90501281)
	443-688, gnl\|oryCun1\|scaffold_202646 (39517-39295)
	443-688, gnl\|panTro1\|chr22 (32208278-32208512)
	443-688, gnl\|rheMac2\|chr3 (14569619-14569386)
	443-688, gnl\|rn3\|chr11 (29556268-29556045)