Non-Coding RNA Search

Ss1.1-Pig4-TMW8028N09.5

Sequence:


               
               GAGCCCATGTTTGTTTTTACCTGCTCACGCTTGCCCCCCCTGAACTCTGTACCCAAGCAC
CACCTGAGACAGGGCTTGACCTGGGTGGAAACCAAAAAGCCTCTGACCATCAACAGTCGG
ACCTAAGCGGGAGGCTGCCAGTGCCCGACAGGGCTGATACACCCATGCTGGAAAAAACAC
GCGAGAAACACGCACGCTAAGAAAATTGAACAAACAAGCTAACAAACATCCAAGTAGGGG
TGGGGACACTGCAGAGAAGAGATAAACAAAGATGAGAAGTGCCTAGTGGGGGGCTTGGAA
TGTCAGACCCCACAAAGTCTGACTTAATATAGGCCAAAGGAAAACTGTAGGAACATAGGA
AAATAGCTCAGCAGAAGGGCAAGACAGCCTGTATCACATATAAATGGAGAGAAAACTGGA
GCGTGGATAGGTTGGTGCTGAGTGAGGCCGATGCTAACAGAGATGGGGACTCTCTTTGGA
GGACCCCCTCAGGCTCCCCAGGATGGGGCGGCTGGCATCAGTGGGCATCTCCAGGCCTCT
AAGTAAAGGCAGGGAGTATAGGCACACCCAGCAGGCTGCTAGGGCAGAAACCAGGGGGTT
TTAGCTAAATTGTTGACAGATTCAACATGCAAGCCTCTGAGGCACGAGGAAAGGGGGGAA
CTCCCAAGGTCTGCAGCTTGGGCAGATGGCTTAGATGCAGGCTATGCCTAAGAGCCAGCC
TAGCACAGACCAACAGGGGCCAGGGCAGGAAAGATAGGGAACAGAAACCACAAAAAGCCA
AAGTAATGAAGATAGTTATAAGCCTTTGGCGTGAAGACCTGGAATCAAAGTGGGCGGGGA
ATTGCAATGCAGTTGCGCCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCCATGTTTGTTTTTACCTGCTCACGCTTGCCCCCCCTGAACTCTGTACCCAAGCAC
CACCTGAGACAGGGCTTGACCTGGGTGGAAACCAAAAAGCCTCTGACCATCAACAGTCGG
ACCTAAGCGGGAGGCTGCCAGTGCCCGACAGGGCTGATACACCCATGCTGGAAAAAACAC
GCGAGAAACACGCACGCTAAGAAAATTGAACAAACAAGCTAACAAACATCCAAGTAGGGG
TGGGGACACTGCAGAGAAGAGATAAACAAAGATGAGAAGTGCCTAGTGGGGGGCTTGGAA
TGTCAGACCCCACAAAGTCTGACTTAATATAGGCCAAAGGAAAACTGTAGGAACATAGGA
AAATAGCTCAGCAGAAGGGCAAGACAGCCTGTATCACATATAAATGGAGAGAAAACTGGA
GCGTGGATAGGTTGGTGCTGAGTGAGGCCGATGCTAACAGAGATGGGGACTCTCTTTGGA
GGACCCCCTCAGGCTCCCCAGGATGGGGCGGCTGGCATCAGTGGGCATCTCCAGGCCTCT
AAGTAAAGGCAGGGAGTATAGGCACACCCAGCAGGCTGCTAGGGCAGAAACCAGGGGGTT
TTAGCTAAATTGTTGACAGATTCAACATGCAAGCCTCTGAGGCACGAGGAAAGGGGGGAA
CTCCCAAGGTCTGCAGCTTGGGCAGATGGCTTAGATGCAGGCTATGCCTAAGAGCCAGCC
TAGCACAGACCAACAGGGGCCAGGGCAGGAAAGATAGGGAACAGAAACCACAAAAAGCCA
AAGTAATGAAGATAGTTATAAGCCTTTGGCGTGAAGACCTGGAATCAAAGTGGGCGGGGA
ATTGCAATGCAGTTGCGCCTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               52-198, - strand, RNAz p=0.998998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-198, - strand, RNAz p=0.998998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-847, gnl|bosTau2|chr1 (51110096-51110908)
               

               
               14-847, gnl|Hg17|chr3 (185552294-185551511)
               

               
               14-847, gnl|Mm7|chr16 (20257016-20256102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-847, gnl|bosTau2|chr1 (51110096-51110908)
               

               
               14-847, gnl|Hg17|chr3 (185552294-185551511)
               

               
               14-847, gnl|Mm7|chr16 (20257016-20256102)

	14-847, gnl\|bosTau2\|chr1 (51110096-51110908)
	14-847, gnl\|Hg17\|chr3 (185552294-185551511)
	14-847, gnl\|Mm7\|chr16 (20257016-20256102)