Non-Coding RNA Search

Ss1.1-Pig4-TMW8028O12.5

Sequence:


               
               AACTACAGATTTTGTGGTTCATCAGACTTTGCCCTACCAGTCAGTTTCGGTGGACACGTT
CAACTCCAAGAATGACGTGTACGTGGCCATCGCTCAGCCCAGCATGGAGAACTGCATGGT
GCTGGAGTGGGACCACATCGAAATGAATTTCCGGAGCTACGACAACATTACAGGTCAGTC
CATCGTGGGCTGTAAAGCCATCCTCATTGACGACCAGGTCTTTGTGGTGGTGGCCCAGCT
CTTCGGCGGCTCCCACATCTACAGATACGACGAGAGCTGGACCAAGTTTGTCAAGTTCCA
AGACATAGAAGTCTCTCGCATTTCCAAGCCCAACGACATCGAGCTGTTTCAGATCGAGGA
CGAGACGTTCTTTGTCATCGCAGACAGCTCCAAAGCGGGGCTGTCCACCGTCTATAAGTG
GAACAGCAAGGGCTTCTACTCGTACCAGTCTCTGCACGAGTGGTTCCGGGACACGGACGC
CGAGTTCGTCGACATCGACGGAAAGTCGCACCTGATCCTGTCCAGCCGCTCCCAGGTCCC
CATCATCCTCCAGTGGAACAAAAGCTCCAAGAAGTTCGTCCCCCACAGTGACATCCCCAA
CATGGAGGACGTGCTGGCCGTGAAGAGCTTTAGGATGCAGAACGCCCTCTACCTGTCTCT
CACCCGCTTCATCGGGGACTCCAGGGTCATGAGATGGAATAGCAAGCAGTTCGTGGAGGT
CCAGGCCCTCCCGTCCCGGGGGGCCATGACCCTGCAGCCCTTCTCGTTCAAAGAGAATCA
CTACCTGGCCCTGGGGAGTGACTATACCTTCTCCCAGATATACCAGTGGGATAAAGAGAA
GCAGCTCTTCAAAAAATTTAAGGAGATTTATGTGCAGGCGCCTCGTTCCTTCACCGCCGT
CTCCACTGACAGGAGAGATTTCTTCTTTGCCTCCAGTTTCAAAGGGAAAACAAAGATTTT
TGAACACATCGTTGTTGACTTAAGTTTGTGAACGTGTGATGGGTGAATTTAAAAGACATG
TAGCTTTAGCTCTTACAAGAAAGGACCGAGGGGGAGGCGGGGAGCAAACGCAGCAGCCAG
ATTCACCGTTCTGATGTGAAAAAGGCACCGGGGACATAGGTAGAAGTTTTCAAACTCTTA
GAACTCATATTTTAATCAGGGATTGCATTTATTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTACAGATTTTGTGGTTCATCAGACTTTGCCCTACCAGTCAGTTTCGGTGGACACGTT
CAACTCCAAGAATGACGTGTACGTGGCCATCGCTCAGCCCAGCATGGAGAACTGCATGGT
GCTGGAGTGGGACCACATCGAAATGAATTTCCGGAGCTACGACAACATTACAGGTCAGTC
CATCGTGGGCTGTAAAGCCATCCTCATTGACGACCAGGTCTTTGTGGTGGTGGCCCAGCT
CTTCGGCGGCTCCCACATCTACAGATACGACGAGAGCTGGACCAAGTTTGTCAAGTTCCA
AGACATAGAAGTCTCTCGCATTTCCAAGCCCAACGACATCGAGCTGTTTCAGATCGAGGA
CGAGACGTTCTTTGTCATCGCAGACAGCTCCAAAGCGGGGCTGTCCACCGTCTATAAGTG
GAACAGCAAGGGCTTCTACTCGTACCAGTCTCTGCACGAGTGGTTCCGGGACACGGACGC
CGAGTTCGTCGACATCGACGGAAAGTCGCACCTGATCCTGTCCAGCCGCTCCCAGGTCCC
CATCATCCTCCAGTGGAACAAAAGCTCCAAGAAGTTCGTCCCCCACAGTGACATCCCCAA
CATGGAGGACGTGCTGGCCGTGAAGAGCTTTAGGATGCAGAACGCCCTCTACCTGTCTCT
CACCCGCTTCATCGGGGACTCCAGGGTCATGAGATGGAATAGCAAGCAGTTCGTGGAGGT
CCAGGCCCTCCCGTCCCGGGGGGCCATGACCCTGCAGCCCTTCTCGTTCAAAGAGAATCA
CTACCTGGCCCTGGGGAGTGACTATACCTTCTCCCAGATATACCAGTGGGATAAAGAGAA
GCAGCTCTTCAAAAAATTTAAGGAGATTTATGTGCAGGCGCCTCGTTCCTTCACCGCCGT
CTCCACTGACAGGAGAGATTTCTTCTTTGCCTCCAGTTTCAAAGGGAAAACAAAGATTTT
TGAACACATCGTTGTTGACTTAAGTTTGTGAACGTGTGATGGGTGAATTTAAAAGACATG
TAGCTTTAGCTCTTACAAGAAAGGACCGAGGGGGAGGCGGGGAGCAAACGCAGCAGCCAG
ATTCACCGTTCTGATGTGAAAAAGGCACCGGGGACATAGGTAGAAGTTTTCAAACTCTTA
GAACTCATATTTTAATCAGGGATTGCATTTATTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26332615|dbj|BAC30025.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26332615|dbj|BAC30025.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               170-288, - strand, RNAz p=0.902032
               

               
               329-448, + strand, RNAz p=0.59812

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-288, - strand, RNAz p=0.902032
               

               
               329-448, + strand, RNAz p=0.59812

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126093, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126093, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               170-1176, gnl|bosTau2|chr6 (23402173-23403179)
               

               
               170-1176, gnl|Hg17|chr4 (24682163-24681164)
               

               
               170-1176, gnl|Mm7|chr5 (51912093-51911059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-1176, gnl|bosTau2|chr6 (23402173-23403179)
               

               
               170-1176, gnl|Hg17|chr4 (24682163-24681164)
               

               
               170-1176, gnl|Mm7|chr5 (51912093-51911059)

	170-288, - strand, RNAz p=0.902032
	329-448, + strand, RNAz p=0.59812

	170-1176, gnl\|bosTau2\|chr6 (23402173-23403179)
	170-1176, gnl\|Hg17\|chr4 (24682163-24681164)
	170-1176, gnl\|Mm7\|chr5 (51912093-51911059)