Ss1.1-Pig4-TMW8028P18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAAGAGGCCAGAGAAGCACAAAGAACAATCCAGAGAAGCAAACTGTCCACCAGGTCTG CAGGCTTTTCCACCAAAATGCTTTTCCCAACTGCGAGGACCAGGCAGCTGAATGGCACTT GTGCCAGTTCGGTGAACATGGAACTCTTCCTCCATTACTCCCTCATCCCATCACTTGTCA TCATTTTGGTCTTGTCCTTTCTCCAAAGACGAGAGCACCATAGGCAGAGAGATGACACTT CTTACCTCCTGGGGAACCACTTCGGACTGATCATACCCCTGGACTTTGTGGGCACTTTTA GTAACCGATGGTCCTATGGAGTCGCCTTTGGGGCCACAGCCAATAAGGTCATGTTCTTGT TCTCAGAAGGCTACCAGCCCCTGCAGGTCCCGCAGTGGGCCCAAGCCTTTGTGCTCCTGA TAGGAGGCATCGAAGTCGGCCTGTGTCACTTCCCCTTCTTTGCCTGCCTCTCGTCGGAGT TCCGGCTGGTCAGCTCCATCCTGGGCTTCAGCTACTCTCTGATCTGGTTTGCTGTCACCA TGCTTTACATCATAGAGTGTCCCCATGGAGAGGAAGAAAAGCCTTTCTTGGAAGTTCACC AGGCAGAGCATGTCAAGCAGCTCCTGAGGAAATGTCCCCTGCAAGAGAGAGAAAAGTCTT GGTTCCAAACCAGGATATATGAATGGGACTCCTGCTTTCAGTTCCCAAGCAGAATGATTG GAACCACTGTGTTGGCTTTCATCTGCCTGTACCTTTTCATTGTCATTGAGTTCTGCGTGT TCGTGTATGTGAGAGATGAGCTGGACGTGTTTGAACGTGAATTAGAGGACTACATTTCCT CCATGAACCAGACAGGGACCCTGACCCCAGTCCTCCTGCAGGTGAAAGAGCTGATTAACG TCACCAAAGGAGTCTGGTTGGTGACCATTTTGCCTGCCTCCCTCACGTGTGTGAGCTATC TGTTCCACATCTTGGCTTGCTACAGAAAGCATATGAAAAGGTTGTGGGCAGGAGATAAAC AATTTCTCCCTCTGAAGTTCCACAGTCCTTCCTCATCAGAGAGTGTGGTGGCCATCGCAA GGTACTCTGGCTGGCAGATCGCCTATATTCTGTGGGGTTACCTTATCATCCACGTGATGC AGAGCCTGTGTGGCGTGGTGATCATGTACAGCCTGGTGCTGCCTGTCATCCACAATCAGG CCATGGCGATGCTCCGAGGACTGGGCATCGGCACCCTCACCATATCCATCGTCCTGGGTC TCATGGTCATGCAGGTATGGATCGCCGCCAGCTTCTTCCTACAACCAAAGATGGGACCAG CTGACAAGCAGAAGCCATTGGCGCTCAACAACAGGAGAGCGTTCCACAACTTCAGCTACT TTCTGTTCTTCTATAACGTGCTGCTGGGCCTGGGCGCCTGCCTCTCCAGGCTTCTCATCA GGCAGACGGCACACAGAACAGCCACTCTTGGAATGGCACTTGGGCTGAACAATGAAGTTT CATCTCAGGTCTAATTCATTCCCTTGGTAAAAAGATGAAGAACTAAAGAGAATTTCTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAAGAGGCCAGAGAAGCACAAAGAACAATCCAGAGAAGCAAACTGTCCACCAGGTCTG CAGGCTTTTCCACCAAAATGCTTTTCCCAACTGCGAGGACCAGGCAGCTGAATGGCACTT GTGCCAGTTCGGTGAACATGGAACTCTTCCTCCATTACTCCCTCATCCCATCACTTGTCA TCATTTTGGTCTTGTCCTTTCTCCAAAGACGAGAGCACCATAGGCAGAGAGATGACACTT CTTACCTCCTGGGGAACCACTTCGGACTGATCATACCCCTGGACTTTGTGGGCACTTTTA GTAACCGATGGTCCTATGGAGTCGCCTTTGGGGCCACAGCCAATAAGGTCATGTTCTTGT TCTCAGAAGGCTACCAGCCCCTGCAGGTCCCGCAGTGGGCCCAAGCCTTTGTGCTCCTGA TAGGAGGCATCGAAGTCGGCCTGTGTCACTTCCCCTTCTTTGCCTGCCTCTCGTCGGAGT TCCGGCTGGTCAGCTCCATCCTGGGCTTCAGCTACTCTCTGATCTGGTTTGCTGTCACCA TGCTTTACATCATAGAGTGTCCCCATGGAGAGGAAGAAAAGCCTTTCTTGGAAGTTCACC AGGCAGAGCATGTCAAGCAGCTCCTGAGGAAATGTCCCCTGCAAGAGAGAGAAAAGTCTT GGTTCCAAACCAGGATATATGAATGGGACTCCTGCTTTCAGTTCCCAAGCAGAATGATTG GAACCACTGTGTTGGCTTTCATCTGCCTGTACCTTTTCATTGTCATTGAGTTCTGCGTGT TCGTGTATGTGAGAGATGAGCTGGACGTGTTTGAACGTGAATTAGAGGACTACATTTCCT CCATGAACCAGACAGGGACCCTGACCCCAGTCCTCCTGCAGGTGAAAGAGCTGATTAACG TCACCAAAGGAGTCTGGTTGGTGACCATTTTGCCTGCCTCCCTCACGTGTGTGAGCTATC TGTTCCACATCTTGGCTTGCTACAGAAAGCATATGAAAAGGTTGTGGGCAGGAGATAAAC AATTTCTCCCTCTGAAGTTCCACAGTCCTTCCTCATCAGAGAGTGTGGTGGCCATCGCAA GGTACTCTGGCTGGCAGATCGCCTATATTCTGTGGGGTTACCTTATCATCCACGTGATGC AGAGCCTGTGTGGCGTGGTGATCATGTACAGCCTGGTGCTGCCTGTCATCCACAATCAGG CCATGGCGATGCTCCGAGGACTGGGCATCGGCACCCTCACCATATCCATCGTCCTGGGTC TCATGGTCATGCAGGTATGGATCGCCGCCAGCTTCTTCCTACAACCAAAGATGGGACCAG CTGACAAGCAGAAGCCATTGGCGCTCAACAACAGGAGAGCGTTCCACAACTTCAGCTACT TTCTGTTCTTCTATAACGTGCTGCTGGGCCTGGGCGCCTGCCTCTCCAGGCTTCTCATCA GGCAGACGGCACACAGAACAGCCACTCTTGGAATGGCACTTGGGCTGAACAATGAAGTTT CATCTCAGGTCTAATTCATTCCCTTGGTAAAAAGATGAAGAACTAAAGAGAATTTCTATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 401-519, - strand, RNAz p=0.578205 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 401-519, - strand, RNAz p=0.578205 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 401-528, gnl|bosTau2|chr8 (32499183-32499310) | |
| 401-528, gnl|Hg17|chr9 (38459839-38459964) | |
| 401-528, gnl|Mm7|chr4 (45879984-45880111) | |
| 644-755, gnl|bosTau2|chr8 (32506994-32507105) | |
| 644-755, gnl|canFam2|chr11 (57773926-57774078) | |
| 644-755, gnl|dasNov1|scaffold_44474 (5573-5749) | |
| 644-755, gnl|echTel1|scaffold_278326 (11575-11392) | |
| 644-755, gnl|hg17|chr2 (110098044-110098219) | |
| 644-755, gnl|Hg17|chr9 (97121199-97121310) | |
| 644-755, gnl|loxAfr1|scaffold_22836 (2720-2911) | |
| 644-755, gnl|mm7|chr4 (45884568-45884744) | |
| 644-755, gnl|Mm7|chr4 (45884595-45884706) | |
| 644-755, gnl|oryCun1|scaffold_164879 (7673-7826) | |
| 644-755, gnl|panTro1|chr12 (113636367-113636192) | |
| 644-755, gnl|rheMac2|chr13 (109655900-109656075) | |
| 644-755, gnl|rn3|chr5 (62376981-62377158) | |
| 756-910, gnl|bosTau2|chr8 (32509974-32510122) | |
| 756-910, gnl|canFam2|chr11 (57678980-57678794) | |
| 756-910, gnl|canFam2|chr11 (57678604-57678946) | |
| 756-910, gnl|dasNov1|scaffold_44474 (7428-7884) | |
| 756-910, gnl|dasNov1|scaffold_90246 (5654-5856) | |
| 756-910, gnl|echTel1|scaffold_278326 (10554-10227) | |
| 756-910, gnl|hg17|chr19 (33008684-33009029) | |
| 756-910, gnl|hg17|chr7 (64322310-64322484) | |
| 756-910, gnl|Hg17|chr9 (97123353-97123507) | |
| 756-910, gnl|loxAfr1|scaffold_22836 (3940-3764) | |
| 756-910, gnl|loxAfr1|scaffold_22836 (3570-3926) | |
| 756-910, gnl|mm7|chr4 (45887621-45887452) | |
| 756-910, gnl|mm7|chr4 (45887349-45887607) | |
| 756-910, gnl|Mm7|chr4 (45887463-45887617) | |
| 756-910, gnl|oryCun1|scaffold_164879 (9949-9756) | |
| 756-910, gnl|oryCun1|scaffold_164879 (9554-9912) | |
| 756-910, gnl|panTro1|chr20 (29184210-29184021) | |
| 756-910, gnl|panTro1|chr20 (29183836-29184176) | |
| 756-910, gnl|rheMac2|chr19 (23162904-23163093) | |
| 756-910, gnl|rheMac2|chr19 (23163279-23162938) | |
| 756-910, gnl|rn3|chr5 (62381168-62380980) | |
| 756-910, gnl|rn3|chr5 (62380847-62381136) | |
| 1116-1231, gnl|bosTau2|chr8 (32514956-32515071) | |
| 1116-1231, gnl|canFam2|chr11 (57689406-57689575) | |
| 1116-1231, gnl|dasNov1|scaffold_49509 (3123-2956) | |
| 1116-1231, gnl|echTel1|scaffold_278326 (6809-6644) | |
| 1116-1231, gnl|fr1|chrUn (93056905-93056762) | |
| 1116-1231, gnl|hg17|chr9 (97133172-97133340) | |
| 1116-1231, gnl|Hg17|chr9 (97133207-97133321) | |
| 1116-1231, gnl|loxAfr1|scaffold_22836 (7426-7593) | |
| 1116-1231, gnl|mm7|chr4 (45893949-45894115) | |
| 1116-1231, gnl|Mm7|chr4 (45893981-45894096) | |
| 1116-1231, gnl|monDom2|scaffold_19 (12555105-12555242) | |
| 1116-1231, gnl|oryCun1|scaffold_164879 (19852-20019) | |
| 1116-1231, gnl|rheMac2|chr15 (38925945-38925776) | |
| 1116-1231, gnl|rn3|chr5 (62390284-62390451) | |
| 1235-1359, gnl|bosTau2|chr8 (32516128-32516252) | |
| 1235-1359, gnl|canFam2|chr11 (57691090-57691233) | |
| 1235-1359, gnl|danRer3|chr1 (7777498-7777366) | |
| 1235-1359, gnl|dasNov1|scaffold_17920 (17244-17101) | |
| 1235-1359, gnl|echTel1|scaffold_278326 (5977-5835) | |
| 1235-1359, gnl|fr1|chrUn (93056664-93056538) | |
| 1235-1359, gnl|hg17|chr9 (97134384-97134527) | |
| 1235-1359, gnl|Hg17|chr9 (97134393-97134517) | |
| 1235-1359, gnl|loxAfr1|scaffold_22836 (8831-8975) | |
| 1235-1359, gnl|mm7|chr4 (45895231-45895374) | |
| 1235-1359, gnl|Mm7|chr4 (45895240-45895364) | |
| 1235-1359, gnl|monDom2|scaffold_19 (12557311-12557452) | |
| 1235-1359, gnl|oryCun1|scaffold_164879 (21474-21609) | |
| 1235-1359, gnl|panTro1|chr11 (81352654-81352797) | |
| 1235-1359, gnl|rheMac2|chr15 (38924736-38924593) | |
| 1235-1359, gnl|rn3|chr5 (62391484-62391627) | |
| 1235-1359, gnl|tetNig1|chr18 (5272849-5272717) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 401-528, gnl|bosTau2|chr8 (32499183-32499310) | |
| 401-528, gnl|Hg17|chr9 (38459839-38459964) | |
| 401-528, gnl|Mm7|chr4 (45879984-45880111) | |
| 644-755, gnl|bosTau2|chr8 (32506994-32507105) | |
| 644-755, gnl|canFam2|chr11 (57773926-57774078) | |
| 644-755, gnl|dasNov1|scaffold_44474 (5573-5749) | |
| 644-755, gnl|echTel1|scaffold_278326 (11575-11392) | |
| 644-755, gnl|hg17|chr2 (110098044-110098219) | |
| 644-755, gnl|Hg17|chr9 (97121199-97121310) | |
| 644-755, gnl|loxAfr1|scaffold_22836 (2720-2911) | |
| 644-755, gnl|mm7|chr4 (45884568-45884744) | |
| 644-755, gnl|Mm7|chr4 (45884595-45884706) | |
| 644-755, gnl|oryCun1|scaffold_164879 (7673-7826) | |
| 644-755, gnl|panTro1|chr12 (113636367-113636192) | |
| 644-755, gnl|rheMac2|chr13 (109655900-109656075) | |
| 644-755, gnl|rn3|chr5 (62376981-62377158) | |
| 756-910, gnl|bosTau2|chr8 (32509974-32510122) | |
| 756-910, gnl|canFam2|chr11 (57678980-57678794) | |
| 756-910, gnl|canFam2|chr11 (57678604-57678946) | |
| 756-910, gnl|dasNov1|scaffold_44474 (7428-7884) | |
| 756-910, gnl|dasNov1|scaffold_90246 (5654-5856) | |
| 756-910, gnl|echTel1|scaffold_278326 (10554-10227) | |
| 756-910, gnl|hg17|chr19 (33008684-33009029) | |
| 756-910, gnl|hg17|chr7 (64322310-64322484) | |
| 756-910, gnl|Hg17|chr9 (97123353-97123507) | |
| 756-910, gnl|loxAfr1|scaffold_22836 (3940-3764) | |
| 756-910, gnl|loxAfr1|scaffold_22836 (3570-3926) | |
| 756-910, gnl|mm7|chr4 (45887621-45887452) | |
| 756-910, gnl|mm7|chr4 (45887349-45887607) | |
| 756-910, gnl|Mm7|chr4 (45887463-45887617) | |
| 756-910, gnl|oryCun1|scaffold_164879 (9949-9756) | |
| 756-910, gnl|oryCun1|scaffold_164879 (9554-9912) | |
| 756-910, gnl|panTro1|chr20 (29184210-29184021) | |
| 756-910, gnl|panTro1|chr20 (29183836-29184176) | |
| 756-910, gnl|rheMac2|chr19 (23162904-23163093) | |
| 756-910, gnl|rheMac2|chr19 (23163279-23162938) | |
| 756-910, gnl|rn3|chr5 (62381168-62380980) | |
| 756-910, gnl|rn3|chr5 (62380847-62381136) | |
| 1116-1231, gnl|bosTau2|chr8 (32514956-32515071) | |
| 1116-1231, gnl|canFam2|chr11 (57689406-57689575) | |
| 1116-1231, gnl|dasNov1|scaffold_49509 (3123-2956) | |
| 1116-1231, gnl|echTel1|scaffold_278326 (6809-6644) | |
| 1116-1231, gnl|fr1|chrUn (93056905-93056762) | |
| 1116-1231, gnl|hg17|chr9 (97133172-97133340) | |
| 1116-1231, gnl|Hg17|chr9 (97133207-97133321) | |
| 1116-1231, gnl|loxAfr1|scaffold_22836 (7426-7593) | |
| 1116-1231, gnl|mm7|chr4 (45893949-45894115) | |
| 1116-1231, gnl|Mm7|chr4 (45893981-45894096) | |
| 1116-1231, gnl|monDom2|scaffold_19 (12555105-12555242) | |
| 1116-1231, gnl|oryCun1|scaffold_164879 (19852-20019) | |
| 1116-1231, gnl|rheMac2|chr15 (38925945-38925776) | |
| 1116-1231, gnl|rn3|chr5 (62390284-62390451) | |
| 1235-1359, gnl|bosTau2|chr8 (32516128-32516252) | |
| 1235-1359, gnl|canFam2|chr11 (57691090-57691233) | |
| 1235-1359, gnl|danRer3|chr1 (7777498-7777366) | |
| 1235-1359, gnl|dasNov1|scaffold_17920 (17244-17101) | |
| 1235-1359, gnl|echTel1|scaffold_278326 (5977-5835) | |
| 1235-1359, gnl|fr1|chrUn (93056664-93056538) | |
| 1235-1359, gnl|hg17|chr9 (97134384-97134527) | |
| 1235-1359, gnl|Hg17|chr9 (97134393-97134517) | |
| 1235-1359, gnl|loxAfr1|scaffold_22836 (8831-8975) | |
| 1235-1359, gnl|mm7|chr4 (45895231-45895374) | |
| 1235-1359, gnl|Mm7|chr4 (45895240-45895364) | |
| 1235-1359, gnl|monDom2|scaffold_19 (12557311-12557452) | |
| 1235-1359, gnl|oryCun1|scaffold_164879 (21474-21609) | |
| 1235-1359, gnl|panTro1|chr11 (81352654-81352797) | |
| 1235-1359, gnl|rheMac2|chr15 (38924736-38924593) | |
| 1235-1359, gnl|rn3|chr5 (62391484-62391627) | |
| 1235-1359, gnl|tetNig1|chr18 (5272849-5272717) |